Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq54391 107 7e-21 seq55279 89.7 2e-15 seq56570 80.6 9e-13 seq49181 78.8 3e-12 seq55692 75.2 4e-11 >seq54391 Length=48172 Score = 107 bits (118), Expect = 7e-21 Identities = 118/156 (76%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| | Sbjct 19756 GGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGGCCGGC 19815 Query 465 GTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTT 524 ||| || |||||||| | ||| ||| || || | | |||| | ||| Sbjct 19816 GTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTT 19869 Query 525 AACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||||||| |||| ||||||||||||| || |||| Sbjct 19870 GACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 19905 >seq55279 Length=95036 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| | | ||||||| |||| |||||||||||||| ||||| ||||| |||| | Sbjct 65918 TCGTTATGTCTTTCGTGCTAGTCGAAACTTACCCGACAAAGAATTCTGCTACGTTAGAAC 65977 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 |||||||||| | |||| || || |||||||| ||| || || Sbjct 65978 CGTTATAGTTATGATCGCCATTCACAGGGGCTTCGATTGCCGGC 66021 >seq56570 Length=6353 Score = 80.6 bits (88), Expect = 9e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||| | | ||||||| |||| |||||||||||||| ||||| ||||| |||| | | Sbjct 6075 GTTATGTCTTTCGTGCTAGTCGAAACTTACCCGACAAAGAATTCTGCTACGTTAGAACCG 6016 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||| | |||| || || ||| |||| ||| || || Sbjct 6015 TTATAGTTATGATCGCCATTCACCGGGACTTCGATTGCCGGC 5974 >seq49181 Length=24962 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/105 (77%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTT-ACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||| || ||| ||| | | || ||||||| ||| ||||| |||||| |||||||||||| Sbjct 17454 TCGCTAGGCCTTTCATACGGGCTGGAACTTTACCTGACAAAGAATTTTGCTACCTTAGGA 17513 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 |||||| ||| |||| ||| | |||||||||| || || || Sbjct 17514 CTATTATAGGTACGACCGTTGTTCAATGGGGCTTCAGTTGCCGGC 17558 >seq55692 Length=1752543 Score = 75.2 bits (82), Expect = 4e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 436 |||||| ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 173765 TCGTTATGCCTCTCGTGCAGGTCGGAACTTACCCGACAAGCAATTTCGCTA 173715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700598809728