Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq54053 87.8 4e-15 seq55670 73.4 8e-11 >seq54053 Length=25039 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||||| ||||| ||| ||| | | | ||| | || || Sbjct 17116 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACACGGCATTGCTTCGTTAGGCTT 17174 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| ||||| || ||||| |||| || |||||||||||||| ||| | |||||||| Sbjct 17175 TCGCTCATTGCGAAAAATTCCCCACTACTACCTCCCGTAGGAGTCTGGGTCATGTCTCAG 17234 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| ||||| || | |||| ||||| Sbjct 17235 TCCCAGTGTGGCTGATCATCCTATCAGA 17262 >seq55670 Length=972380 Score = 73.4 bits (80), Expect = 8e-11 Identities = 121/175 (69%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || | ||| || | | ||| | |||| || |||||| |||| ||||| || Sbjct 332881 CCTTCTTCACTTGCGCAACATTGTTGGATTGGACTTTCACCCATTGTCCAAGATTCCCCA 332822 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 ||||| |||| || |||||| || ||||||||||| ||| |||| || | ||| Sbjct 332821 CTGCTATCTCCTGTGGGAGTTCGGGTCGTGTCTCAGTCTCAACGTGGTTGATCATCCGAA 332762 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | ||| ||| ||| ||| | || ||||| |||| Sbjct 332761 AAGACCAGCTAAGCATCATTAGCTTGGTTAGCCTTTAACTAACCAACTACTTAAT 332707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067669177536