Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54992 174 1e-38 seq50617 132 4e-26 >seq54992 Length=480207 Score = 174 bits (192), Expect = 1e-38 Identities = 403/593 (68%), Gaps = 21/593 (4%) Strand=Plus/Minus Query 61054 CGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 |||||| |||| |||||| ||| |||| ||| || ||| |||||||| || || || Sbjct 460668 CGTTTCTGTAT-GTTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGA 460610 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-- 61170 || || |||||||| | |||||||| || | ||| | ||| | | | ||||| Sbjct 460609 GGCCTCATTCTGGACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATC 460550 Query 61171 CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | ||| || | | ||| ||| |||||| || | | || ||||||||||| || Sbjct 460549 CCTTTCTCCCGACGAGAA--ACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCT 460492 Query 61231 GACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 ||||| ||||| |||||| | ||| | ||| | | ||||||| || || | || Sbjct 460491 GACGGCATCGTTTTGGAGAATCTCGCTGGCAGGTT-CATGAAGGAGGTCCAGGTCGCCGA 460433 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || ||||||||||||||||| ||||| |||||| | ||||| ||||||||||| Sbjct 460432 GGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAATATTCACTCCGAGATGTACAG 460373 Query 61350 TGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | || | |||| || ||||||| ||| || | ||| | || | ||| | ||| Sbjct 460372 TCTTTTGCTCGAGACCTACATCAAGGACTCCGCCCAGAA--GCACCGCCTCTTCCACGCC 460315 Query 61408 ATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 |||||||| | || ||| | || ||| || | |||||| | |||||| | Sbjct 460314 ATCGAGACCGTCCCTTGCGTCGCTAA---GAAGGCACAGTGGGCCCTGCGCTGGATCGAC 460258 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | || | | || | ||| || | | || || ||| || || ||| | || Sbjct 460257 GGGGC--CGAGT-CCTTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTC 460201 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||| ||| || ||| ||||| ||||||||||| || || | |||||||||||| Sbjct 460200 TTCTCCGGAAGCTTCTGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTG 460141 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||| ||| ||| |||| || || |||||||| | || || || || || Sbjct 460140 ACCTTCTCCAACGAGCTGATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGC 460088 >seq50617 Length=115889 Score = 132 bits (146), Expect = 4e-26 Identities = 561/873 (64%), Gaps = 16/873 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| || || ||| |||||||| || || || || || |||| Sbjct 91857 TGTTTCCGATCCAGTACCCCGAAATATGGGAGATGTACAAGAAAGCCGAGGCCTCTTTCT 91916 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC 61182 |||| | |||||||| || | || | ||| | | ||||| || | | | | Sbjct 91917 GGACTGCCGAGGAGGTTGACCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTCACCCC-C 91975 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | || |||| || ||| || || | || |||||||| ||||| || || ||||| Sbjct 91976 GACGAGAAACACTTTATTTCCCACGTCCTAGCTTTCTTTGCAGCTTCAGATGGCATCGTT 92035 Query 61243 AATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 ||||| | ||| | ||| | | ||||||| || || | ||||| || || Sbjct 92036 TTGGAGAACCTCGCTGGGAGGTT-CATGAAGGAGGTCCAGGTTGCCGAGGCCCGCGCCTT 92094 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 ||||||||||||||||||||| || ||| | ||||| |||||||| ||| | | | || Sbjct 92095 CTACGGCTTCCAGATTGCCATCGAAAATATTCACTCCGAGATGTATAGTCTGTTGCTGGA 92154 Query 61362 TACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 || ||||||| ||| | || | || | ||| ||||||||||||| | || Sbjct 92155 GACCTACATCAAGGATTCAGATGAGAAGCACCGCCTCTTCCATGCCATCGAGACCGTCCC 92214 Query 61422 GGCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | ||| || ||| || | |||||| | |||||| | | ||| | Sbjct 92215 --CTGTGTGGCTAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGG---CTCGGAGTCC 92269 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 |||| || || | | || || ||| ||||| || | || ||| ||| || Sbjct 92270 TTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTC 92329 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| || || |||||||| || || || | ||||| ||||| |||||| ||| ||| Sbjct 92330 TGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAACGAG 92389 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 |||| || || |||||||| ||||||| || || || |||||| | || || Sbjct 92390 CTGATCTCCCGTGACGAGGGGCTGCATTGCGACTTCGCGTGCCTGCTAT--ACACCCT-C 92446 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 || ||| | | ||| |||| || | ||| || || || ||||| ||| Sbjct 92447 CTAAGGAAGAAGCTGAGTGAGCAGCGCGTCAAGGGGATCGTCCGCGACGCGGTGGAGATC 92506 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 || ||| || || ||||| | || | | | | || ||||| | | || Sbjct 92507 GAGAGGGAGTTCGTGTGCGACGCGCTACCATGCGCGTTGGTGGGGATGAACGGAGATCTG 92566 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAG-CG 61838 ||| ||||| || || || || ||||| | || |||| || || || ||| | Sbjct 92567 ATGAGCCAGTACATCGAGTTCGTGGCCGATAGGCTCTTGGGCGCGTTCGG-ATGCGGAAA 92625 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 |||||| ||| | ||||| ||||||| ||||| |||| ||| || | || ||||| Sbjct 92626 GATCTACAATGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAAGGGAAGAC 92685 Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| || | || || || || || Sbjct 92686 CAATTTCTTCGAAAAGAGGGTCGGAGAGTACCA 92718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055346375920