Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1861 378 8e-100 seq47040 154 2e-32 seq54963 150 2e-31 >seq1861 Length=68153 Score = 378 bits (418), Expect = 8e-100 Identities = 655/944 (69%), Gaps = 20/944 (2%) Strand=Plus/Plus Query 161550 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 161609 |||||||||||| || ||||| || || | || ||||| ||| ||| |||| | || Sbjct 26984 TTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGG 27043 Query 161610 CGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTC 161669 |||||| |||| || || || || | || | |||||| || ||| | || ||||| Sbjct 27044 GGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCGAGTTC 27103 Query 161670 CTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGG 161728 |||| | || || ||||| || | | || || |||||| |||| ||| | | | | Sbjct 27104 CTATTTGGAAGGCTGCAACTTCT-TAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAG 27162 Query 161729 GTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATC 161787 || ||| || || || || |||||||| || | ||||| ||||| | ||| Sbjct 27163 CACACTCT-TTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGT 27221 Query 161788 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTC 161847 ||| | || | || |||| |||||| || ||| | || || || || Sbjct 27222 CAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-----------GGACTAATAGGTCTC 27270 Query 161848 ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGC 161906 | | | ||| |||||||||||||||| ||| || | | || ||||| ||||| || || Sbjct 27271 ACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 27329 Query 161907 TTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTC 161966 ||||||| ||| |||||| ||||| | || || || || |||| || || || || Sbjct 27330 ATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATC 27389 Query 161967 GTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTAT-TTTCAGGTTCTTACTTTTCC 162025 | |||||||| | ||| ||||| || || ||||| ||||| ||||| || || Sbjct 27390 GGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTCA--TTCTTTCTCTTTT 27447 Query 162026 TACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCT 162085 | |||| || || |||||||| | || || || || |||||||| || || ||| | Sbjct 27448 TCTAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAA 27507 Query 162086 TGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAG 162145 | || | |||| |||| | | |||||| |||| || | |||| || | | ||| Sbjct 27508 TTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAG 27567 Query 162146 ATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACT 162205 ||||||| |||||||| || |||||| || | || |||| || || ||||| | Sbjct 27568 ATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 27627 Query 162206 CGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGC 162265 | ||||| || || |||| || ||||| || ||||| || || ||||| ||||| | Sbjct 27628 CAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAAC 27687 Query 162266 GTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCG 162325 ||||||| |||||| ||||||| || || | || | || | |||| ||| || | | Sbjct 27688 GTTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTG 27747 Query 162326 GTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTG 162385 | | | || || ||||| || || ||||| || |||||||| |||||||| || |||| Sbjct 27748 GAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTG 27807 Query 162386 CAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTC 162445 ||| || |||||||||||||| || |||||||| || ||||| || || ||||||||| Sbjct 27808 CAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTA 27867 Query 162446 TTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTT 162489 ||| ||| ||| ||| | ||||| || ||||| |||||| Sbjct 27868 TTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 154 bits (170), Expect = 2e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 160187 GTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGT 160246 |||||||| || ||||| || || |||||| || |||| ||| | |||| || | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 160247 CAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTT 160306 || || || || | | || |||||| || || ||||||||||| |||| ||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 160307 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGG 160366 |||||||| || || ||||| ||||||||||| || || || ||| | ||||| ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 160367 GTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGG 160409 |||||||| || | || || |||||||||||| ||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 160187 GTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGT 160246 |||||||| || ||||| || | |||||| ||||||| || | |||| || | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 160247 CAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTT 160306 || || || || || | ||||||||| || || ||||||||||| |||| ||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 160307 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGG 160366 |||||||| || || ||||| ||||||||||| || || |||||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 160367 GTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGG 160409 |||||||| || || || || || ||||||||| ||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550646784563400