Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1861 379 3e-100 seq54963 125 9e-24 seq47040 125 9e-24 >seq1861 Length=68153 Score = 379 bits (420), Expect = 3e-100 Identities = 673/977 (69%), Gaps = 16/977 (2%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || | || || ||||| |||||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| | || | || || ||| |||| || || || ||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || | ||| || |||||| | || ||| || | || || ||| | || | | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-T 27127 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || | ||| || | | | || ||| | | |||| ||||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 27187 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||| ||| | ||||| ||||| | ||| ||| | || | || ||| ||||||| Sbjct 27188 TCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGT 27247 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || ||| | ||||| || ||| | | ||| |||||||||| || || Sbjct 27248 TGCTCTCT-----------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCG 27296 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | || ||||| ||||| || || ||||||| ||| || ||| ||||| Sbjct 27297 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTT 27355 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || || || || | || ||||||||| |||||||||| | ||| ||| | Sbjct 27356 TTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTG 27415 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 |||| ||||| || || | ||| | ||||| || | || || ||||| ||||| ||| Sbjct 27416 GTGTAGCAGCTATATTTCA-TTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGA 27474 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | | || | || || || | | || | Sbjct 27475 ACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTC 27534 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||||| || |||| | |||||| | |||||||||||| ||||| || ||| | Sbjct 27535 ATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTG 27594 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| ||||| || ||||| |||||||| || |||| || |||| Sbjct 27595 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGT 27654 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||||||||| ||| | || ||||| | ||||| |||||| ||||||| |||| Sbjct 27655 CCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTG 27714 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 | | || | || | |||| | | | || | | ||||| ||||| ||||| | Sbjct 27715 TACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 27774 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 |||| ||||||||||| || || || ||| | |||| ||||||||| || || ||||||| Sbjct 27775 GTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTT 27834 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | |||||||||||||| ||||| ||||||||| ||| | | ||| ||| || |||| Sbjct 27835 TCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATC 27894 Query 190945 AACCCCATGAGAATTTT 190961 | || ||||| || ||| Sbjct 27895 AGCCTCATGAAAACTTT 27911 >seq54963 Length=251348 Score = 125 bits (138), Expect = 9e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 189236 TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTC 189295 |||| || || || ||||||| ||| || | || || || || ||||||| |||||| Sbjct 117194 TTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGTC 117253 Query 189296 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTG 189355 |||| || ||||||| ||||| | || || ||| || ||||||| |||| ||| Sbjct 117254 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 117313 Query 189356 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTG 189415 | ||||| || |||||||||||||| |||||||| || |||||| | | || |||| Sbjct 117314 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGTG 117373 Query 189416 TCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 | ||||| || || || || | ||||||||||| Sbjct 117374 TATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq47040 Length=8764 Score = 125 bits (138), Expect = 9e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 189236 TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTC 189295 |||| || || || ||||||||||| || | | || || || ||||||| |||||| Sbjct 5686 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGTC 5627 Query 189296 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTG 189355 |||| || ||| ||| | ||| | || || ||| || ||||||| |||| ||| Sbjct 5626 AAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 5567 Query 189356 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTG 189415 | ||||| || |||||||||||||| |||||||| || || ||| | || || || |||| Sbjct 5566 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGTG 5507 Query 189416 TCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 | ||||| || | || || || ||||||||||| Sbjct 5506 TATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633241405422000