Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1861 392 4e-104 seq47040 178 1e-39 seq54963 172 6e-38 seq2016 113 5e-20 >seq1861 Length=68153 Score = 392 bits (434), Expect = 4e-104 Identities = 652/937 (70%), Gaps = 20/937 (2%) Strand=Plus/Plus Query 163923 TTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 163982 || || ||||| |||||||| || || | || ||||| ||| ||| |||| | || Sbjct 26985 TTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGG 27044 Query 163983 GGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGT 164042 || ||| |||| |||||||| ||||| || | ||| || ||||| | ||| ||| Sbjct 27045 GGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCG---AGT 27101 Query 164043 TACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTAT 164098 | | ||| ||| ||| || ||| | || || || || || || | ||| || | | Sbjct 27102 TCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTT 27160 Query 164099 GGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTG 164158 | || ||| | | |||| |||||||| || | || || || || | | | ||||| Sbjct 27161 AGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTG 27220 Query 164159 CCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTT 164218 ||| | || | || ||| ||||||| || || ||| || || ||| | Sbjct 27221 TCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT--GGA---------CTAATAGGTCT 27269 Query 164219 CATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGC 164278 || | | || |||||||| |||| || ||| | || || || ||||| || || Sbjct 27270 CACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGC 27329 Query 164279 GTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATC 164338 ||||||| ||| |||||| | ||| | || || || || || | || || ||||| Sbjct 27330 ATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATC 27389 Query 164339 TAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCT 164398 |||||||||||| || ||||| || || || || || |||| | | || | Sbjct 27390 GGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTT 27448 Query 164399 CCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCT 164458 | |||| || ||||| |||||| | ||||| || ||||||||||| ||||| || | | Sbjct 27449 CTAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAAT 27508 Query 164459 TGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGA 164518 ||| | |||||| || || | |||||||||||||||| |||| | |||||| |||||||| Sbjct 27509 TGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGA 27568 Query 164519 TGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTC 164578 |||||| ||||||| || || || | || ||||||| ||||| ||||| || Sbjct 27569 TGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 27628 Query 164579 GATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCG 164638 |||||||| || |||| ||| ||||| || || ||||| || |||| |||||| || Sbjct 27629 AATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACG 27688 Query 164639 TTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGG 164698 |||||| || ||| ||||||| ||||| | || | | | |||| ||| || |||| Sbjct 27689 TTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGG 27748 Query 164699 TATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGC 164758 | ||||||| || || || || ||||| ||||| ||||| |||||||| || | || Sbjct 27749 AGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGC 27808 Query 164759 AGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACT 164818 || ||| ||||||||||||||||| ||||| || || || || || | |||||||| | Sbjct 27809 AGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTAT 27868 Query 164819 CCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAA 164855 | ||| ||||||| | ||| ||||| || ||| Sbjct 27869 TCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAA 27905 >seq47040 Length=8764 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 160956 GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 161015 ||||||||||| || |||||||| ||||| | | | || ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 161016 CAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTT 161075 ||||| || ||| | |||| ||| || || || |||||||| |||||||||||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 161076 GTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || |||||||| || ||||||||||| |||||||| || || ||||| ||||| |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 161136 GTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTC 161173 || ||||| || | || || || ||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 160956 GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 161015 ||||||||||| || ||||||| ||||| | ||| || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 161016 CAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTT 161075 ||||| || ||||| |||||||| || || || |||||||| |||||||||||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 161076 GTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || |||||||| || ||||||||||| |||||||| || |||||||| |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 161136 GTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTC 161173 || ||||| || || || || | ||||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 113 bits (124), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| || |||||||||||||| | || | || |||| ||||| |||||| Sbjct 155473 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATG 155532 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| |||||||| || || ||||| || ||||||| || |||||||| ||||| ||| Sbjct 155533 ATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGCT 155591 Query 161133 GGTGTCTTCGGTGGTTCTCTGTTC 161156 ||||| ||| |||| || || ||| Sbjct 155592 GGTGTATTCAGTGGCTCCCTCTTC 155615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558588267745200