Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq51103 84.2 3e-11 seq48769 84.2 3e-11 >seq51103 Length=109835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 162595 TATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAG 162654 |||| ||| |||| | | || || || ||||||||||| | || | || ||| Sbjct 21263 TATGGGATATATGCGTGCAATGGGATACTCTTCAATCACGAGTCGCCGCGGCGGGGCGAG 21204 Query 162655 ACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGT 162714 | ||||| || | |||||| || || || || || | | || |||||||| Sbjct 21203 AACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGGATCAAGATCGGCCTCCAAAGC 21144 Query 162715 GATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTA 162774 | || ||||| || |||| ||| | ||||||||| |||| |||||||| Sbjct 21143 AAGCTCTTCCTTGGGAATCTCAGCGCCTCCAGGGACTGGGGATTCGCCGGGGACTACGTG 21084 Query 162775 GAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 ||||| |||||| ||||||| |||||||| ||||| || || || ||| | || || Sbjct 21083 GAGGCAATGTGGATGATGCTGCAGCAAGACAAGCCGGACGACTACGTGGTTGCGAC 21028 >seq48769 Length=5169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 162595 TATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAG 162654 |||| ||| |||| | | || || || ||||||||||| | || | || ||| Sbjct 5107 TATGGGATATATGCGTGCAATGGGATACTCTTCAATCACGAGTCGCCGCGGCGGGGCGAG 5048 Query 162655 ACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGT 162714 | ||||| || | |||||| || || || || || | | || |||||||| Sbjct 5047 AACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGGATCAAGATCGGCCTCCAAAGC 4988 Query 162715 GATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTA 162774 | || ||||| || |||| ||| | ||||||||| |||| |||||||| Sbjct 4987 AAGCTCTTCCTTGGGAATCTCAGCGCCTCCAGGGACTGGGGATTCGCCGGGGACTACGTG 4928 Query 162775 GAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 ||||| |||||| ||||||| |||||||| ||||| || || || ||| | || || Sbjct 4927 GAGGCAATGTGGATGATGCTGCAGCAAGACAAGCCGGACGACTACGTGGTTGCGAC 4872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690544719278280