Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq63997 145 1e-32 seq609463 78.8 2e-12 seq759 78.8 2e-12 >seq63997 Length=3562 Score = 145 bits (160), Expect = 1e-32 Identities = 231/331 (70%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGAT--- 67 ||||| |||||||||| |||||| ||| | | ||||||| || | ||| ||| | Sbjct 819 AGGGGAGTGAAATAGAACCTGAAACCGTGTACGTACAAGCAGTGGAAGCATAGTTTTAAA 878 Query 68 ----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||| |||| ||||||| |||||| | | ||| || || || ||| || Sbjct 879 ATAATATGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTT-GTACTCTGTAGCAAG 937 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | || |||||||| |||| |||| | ||| |||| |||| Sbjct 938 GTTAACCAAATAGGGG-----AGCCGAAGGGAAACCGAGTCCTAAATAGGCGTTAAGTTT 992 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || |||| ||||||| |||||||| ||||| ||||||||||| ||||| | Sbjct 993 CAGGGTACAGACCCGAAACCCGGTGATCTAGCCACGGGCAGGTTGAAGGTTGGGTAAAAC 1052 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 ||||||||||||||| | |||||||| | |||||||| || ||||||| Sbjct 1053 CAACTGGAGGACCGAACCGACTGATGTTGAAAAATCAGCGGATGACCTATGGCTAGGGGT 1112 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||| |||| |||||| || Sbjct 1113 GAAAGGCCAATCAAACCGGGAGATAGCTGGT 1143 >seq609463 Length=469 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 153 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 212 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 213 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 272 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 273 AACCAAGATCGGATATAGCTGGT 295 >seq759 Length=12707 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 3349 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 3408 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 3409 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 3468 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 3469 AACCAAGATCGGATATAGCTGGT 3491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 964277201920