Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13351 147 9e-33 seq183109 123 1e-25 seq22994 87.8 7e-15 >seq13351 Length=6636 Score = 147 bits (162), Expect = 9e-33 Identities = 201/276 (73%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCC 468 ||||||| |||||| |||||||| | |||||| ||||| | |||| |||||| Sbjct 2383 CGTCTTGAAACACGAACCAAGGACTGTAACATGTATGCAATCCAACAGGTGAGGAAACCC 2442 Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACCGATC 527 | | ||| ||| ||| || | | ||| | |||| |||||||||||||| | Sbjct 2443 GAAGGAATAAGGAAGCTGATTGGCAG-GATCCCCCTAGCGGGTTGCACCATCGACCGACC 2501 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 |||| | | || ||||| |||| || |||| ||| ||||||| ||||||||| | Sbjct 2502 TTGATCTTCTGAGAAGGATTCGAGTGTGATCATACATGTAGGGACCCAAAAGATGGTAAG 2561 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| |||| ||||| |||||||||||||||||||| |||| || | || Sbjct 2562 CTATGCCTGTGCAGGGCGAAGCATGAGGAAACTCTGGTGGAGGCCCGCAACGAT--TGAT 2619 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||| | || || | |||||||||||||||| Sbjct 2620 GTGTAAATTGTTCATCTGACTTGGGTATAGGGGCGA 2655 >seq183109 Length=1768 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 1272 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1331 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 1332 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1390 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 1391 GAGAGAGTTCAAGAGTACGTGAAACTG 1417 >seq22994 Length=5549 Score = 87.8 bits (96), Expect = 7e-15 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||||||||||||||| | |||| ||| |||||||| | || || | | ||| Sbjct 3369 GAGTTGGGTTGTTTGGGAATGCAACCCTAATAGGGTGGTAAATTCCATCCAAGGATGAAT 3428 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | |||| |||| ||||||| || |||||||||||| |||||| || Sbjct 3429 ACCGACGTAAGACAGATAAAAAACAAGTACCACGAGGGAAAGATGAAAAAGACTTTGAAA 3488 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||| ||| | | |||||||| Sbjct 3489 AGAGAGTCAAATAATGCTTGAAATTG 3514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2061207440500