Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq815756 183 8e-44 seq543186 178 3e-42 seq863399 150 5e-34 seq606760 114 3e-23 seq213685 114 3e-23 seq801519 113 1e-22 seq194039 100 7e-19 seq688445 96.9 9e-18 seq257910 91.5 4e-16 seq437918 80.6 7e-13 seq781053 77.0 8e-12 >seq815756 Length=326 Score = 183 bits (202), Expect = 8e-44 Identities = 233/320 (73%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| |||||||||||||||||||||| ||| ||||||||||| |||||| | || Sbjct 326 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTG 267 Query 84 GGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTG 143 |||||||||||| | ||| || | | |||| | | || ||||||| ||||| ||| Sbjct 266 GGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACTCT 207 Query 144 GGAATTGCATTTGTGACT-----GCACGACTAGAGT-GTGTCAGAGGGGGGTGGAATTCC 197 ||| ||| | | ||| || | | || ||| | | ||||||| |||| Sbjct 206 GGACAAGCAGTGGAAACTACCAAGCTCTAGTACAGTAGGGGCAGAGGG------AATTTT 153 Query 198 ACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCT 257 ||| | | |||||||||||||| || | | ||||||||| |||||| ||| | || Sbjct 152 CGGTGGAACGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCT 93 Query 258 GGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 317 ||| |||||||| || | |||||||| ||||||| || ||||||||||||| | Sbjct 92 GGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAG 33 Query 318 TAGTCCACGCCCTAAACGAT 337 |||||| ||| |||||||| Sbjct 32 TAGTCCTAGCCGTAAACGAT 13 >seq543186 Length=544 Score = 178 bits (196), Expect = 3e-42 Identities = 243/336 (72%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| | ||| | Sbjct 533 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGG-AAGTG 475 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT-----GT 122 || ||||||| ||||||||||||| | || | ||||| | ||||| || Sbjct 474 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAAGCGGTG-----AATCAGGTTGAAAGT 420 Query 123 GAAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 |||| | | | || ||| | | ||| | | || ||| ||||| | ||| Sbjct 419 GAAAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAG 363 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | |||||||| | |||||| ||||||| |||| |||| | |||||| |||| Sbjct 362 AGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAAATATACGAAGGAACGCCAAAA 303 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||||| | ||||| || |||||| | ||||||| |||||||| |||| Sbjct 302 GCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACA 243 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||||| | | | ||| || Sbjct 242 GGATTAGATACCCTGGTAGTCCATGTCGTGAACAAT 207 >seq863399 Length=305 Score = 150 bits (166), Expect = 5e-34 Identities = 209/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 45 CGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCG 104 ||||||||| ||| ||||||||||| |||||| | |||||||||||||| | ||| | Sbjct 1 CGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTG 60 Query 105 GTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCA 164 | | | |||| | | || ||||||| ||||| ||| ||| || | | ||| | Sbjct 61 GCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACTCTGGACAGGCGGTGGAAACTACC 120 Query 165 CGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATAT 224 || |||| | || | | |||||| | ||| ||| ||| ||||| |||| || Sbjct 121 AAGCTGGAGTACGGTAGGAGTAGAGGGAATTTCCGGTGGAGCGGTGTAATGCATAGACAT 180 Query 225 GTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAA 284 | | ||||||||| |||||| ||| | ||||| |||||||| || | ||||| Sbjct 181 CGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAA 240 Query 285 AGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||||||| || ||||||||||||| ||||||| ||| |||||||| Sbjct 241 AGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGAT 293 >seq606760 Length=472 Score = 114 bits (126), Expect = 3e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 67 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 126 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||| ||||||| | |||||||||||||| Sbjct 127 AAGCGTTATTCGGAATGATTGGGCGTAAAGCGT 159 >seq213685 Length=1542 Score = 114 bits (126), Expect = 3e-23 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 66 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 125 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 126 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 185 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| |||||||| Sbjct 186 TACCCCAGTAGTCCTAGCCGTAAACGAT 213 >seq801519 Length=333 Score = 113 bits (124), Expect = 1e-22 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 120 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 61 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAG 114 |||||||| |||||| | |||||||||||||| | ||| || | | |||| Sbjct 60 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAG 9 >seq194039 Length=1682 Score = 100 bits (110), Expect = 7e-19 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 221 ATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCA 280 |||| | |||||| |||| ||||||||||| | ||||| || ||||| | Sbjct 1363 ATATACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCGGG-GTG 1421 Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 1422 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 1478 >seq688445 Length=402 Score = 96.9 bits (106), Expect = 9e-18 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 13 ATAAGCACCGGCT-AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 ||||| || |||| |||| |||||||||||||||||||| ||| ||| ||||| ||| Sbjct 114 ATAAGAACGGGCTTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCT 55 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 ||||||| ||||||||||||| | || ||||||| Sbjct 54 TCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 20 >seq257910 Length=1290 Score = 91.5 bits (100), Expect = 4e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||| |||| ||||||||| ||| ||||||||||| Sbjct 191 GAATAAGCATCGGCTAACTCTGTGCCAGAAGCCACGGTAATACAGAGGATGCAAGCGTTA 132 Query 71 ATCGGAATTACTGGGCGTAAAGCGT 95 |||||| | | ||||||||| || Sbjct 131 TCCGGAATGATTAGGCGTAAAGTGT 107 >seq437918 Length=716 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 45 CGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCG 104 ||||||||| ||| ||||||||||| |||||| | |||||||||||||| | ||| | Sbjct 716 CGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTG 657 Query 105 GTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC-CTGG 144 | | | |||| | | || ||||||| ||||| ||| |||| Sbjct 656 GCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACTCTGG 616 >seq781053 Length=344 Score = 77.0 bits (84), Expect = 8e-12 Identities = 131/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 36 CAGCAGCCGCGGTAATACGTAGGG--TGCAAGCGTTAATCGGAATTACTGGGCGTAAAGC 93 |||||| |||||||||| ||||| |||||| |||| |||| | |||||||||||| Sbjct 187 CAGCAGTCGCGGTAATA--TAGGGGATGCAAGAGTTATCTTGAATGATTGGGCGTAAAGC 130 Query 94 GTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCAT 153 || | ||| || | | |||| | | || ||||||| ||||| ||| ||| || Sbjct 129 GTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACTCTGGACAGGCGG 70 Query 154 TTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAA 213 | | ||| | || |||| | || || | |||||| | ||| ||| |||||| Sbjct 69 TGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAA 10 Query 214 TGCGTAGA 221 |||||||| Sbjct 9 TGCGTAGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1278301685440