Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq63997 156 6e-36 seq759 149 9e-34 seq728539 114 2e-23 seq864983 107 3e-21 seq460139 107 3e-21 seq749761 102 1e-19 seq586055 95.1 2e-17 seq3703 95.1 2e-17 seq613106 87.8 2e-15 seq292975 87.8 2e-15 seq133022 78.8 1e-12 >seq63997 Length=3562 Score = 156 bits (172), Expect = 6e-36 Identities = 188/253 (74%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 2192 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACTTCCACTTTC-GTGTTTGCACA 2134 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || | ||| |||| | | ||||| | Sbjct 2133 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTAACGTCAGCTACA 2074 Query 122 CACGT-----CGTTCACCAGCAGTG-GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 || | ||||| || || ||||||||||||||||||| | |||||| Sbjct 2073 GGAGTAAATCCTTTCACTTAATGTTAGCGTGCCTTCTCCCGAAGTTACGGCACTATTTTG 2014 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| |||| | | | |||||||||||||||||| | |||||||||| Sbjct 2013 CCTAGTTCCTTCACCTGGGTTCTCTCAAGCGCCTTAGTATTCTCTACTTAACCACCTGTG 1954 Query 236 TCGGTTTACGGTA 248 |||||||| |||| Sbjct 1953 TCGGTTTAGGGTA 1941 >seq759 Length=12707 Score = 149 bits (164), Expect = 9e-34 Identities = 179/241 (74%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 4904 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 4846 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 4845 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 4789 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 4788 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 4737 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 4736 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 4677 Query 248 A 248 | Sbjct 4676 A 4676 >seq728539 Length=375 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||| ||||||||||| |||||| || |||| | Sbjct 358 GGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCT 299 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | |||| |||||| |||||| || ||||||||||||||| |||| Sbjct 298 CAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 251 >seq864983 Length=304 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||| | |||||| ||| |||| | | Sbjct 212 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCAAGTTCCTTCGACACGGTTCTCTC 153 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||| ||||||||| |||| Sbjct 152 AAGCGCCCTAGTATACTCTACTTGTTCACCTATGTCGGTTTGGGGTA 106 >seq460139 Length=673 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 489 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 548 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || | ||||||||||||| |||| Sbjct 549 AAGCGCCCTAGTATACTCTACTTGTTCTCCTGTGTCGGTTTGGGGTA 595 >seq749761 Length=362 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||| || | |||| | Sbjct 144 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC--TATAGAGAGTTGTCT 87 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 86 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 39 >seq586055 Length=493 Score = 95.1 bits (104), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 12/179 (7%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||| ||| ||||| | |||| |||| ||||| ||| ||| | | || Sbjct 170 TTCCAGCACCGGGAAGGTGTCAGACTCTATATATCGTGTTACCA-CTTAGCAAAGTCTTG 112 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 111 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 55 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 54 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT 4 >seq3703 Length=9340 Score = 95.1 bits (104), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 26/222 (12%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| || ||| ||||||||| || ||||||| | ||||| | ||| || |||| Sbjct 2453 CCTTCCGGTACTGGGAAGGCGTCAGCCCCTATACATGGTCTTAC-GACTTTGCGGAGACC 2511 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCT---CTATTCTCTGCGACCACCACCAGCTCAAC 122 | ||||||| ||| |||||||| ||| || || |||||||| ||| | Sbjct 2512 TATGTTTTTGGTACACAGTCGC---CCTGGCCTGGTCACTGCGACC----CCATTT---- 2560 Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 || || || ||||||||||||||||||||||||||| |||||||||| || Sbjct 2561 -----GTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTT 2609 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCT 224 ||||| | | || | | | ||| ||||||||||||| Sbjct 2610 CCTTAGAGATATTTTTCTTGTGCCCCTAGGTATTCTCTACCT 2651 >seq613106 Length=466 Score = 87.8 bits (96), Expect = 2e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 156 GAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTAT 215 |||||||||||| ||||||||||| |||||| || |||| | | | |||| |||||| Sbjct 115 GAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTAT 56 Query 216 TCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| || ||||||||||||||| |||| Sbjct 55 ACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 23 >seq292975 Length=1130 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||| |||||| ||||| | || ||||||| | |||| | Sbjct 239 GGCACCCCTTCTCCCGAAGTT-CGGGGCTATTTTTCAGAGTTCCTTAGAGAGAGTTGTCT 181 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||| ||||||||| |||| Sbjct 180 CATGCCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTTCGGGTA 133 >seq133022 Length=2265 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||| |||||||||||| ||||||| ||| ||| ||| |||||| || |||| | Sbjct 1678 CACCTCTTCTCCCGAAGCTACGGGGTCATCTTGTCGAGTTCCTTCGACATGGTTCTCTTA 1737 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || |||| |||||| ||| |||| Sbjct 1738 AGCGCCCTAGTATACTCTACTTGTTCACCGGTGTCGATTTGGGGTA 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688506408030