Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq728539 95.1 1e-17 seq759 86.0 7e-15 seq3703 84.2 2e-14 seq460139 82.4 8e-14 seq864983 77.0 3e-12 seq63997 75.2 1e-11 >seq728539 Length=375 Score = 95.1 bits (104), Expect = 1e-17 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 256 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 315 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 ||||| |||||| |||||| |||||||||||| || |||| ||| | || ||| ||| Sbjct 316 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG 372 >seq759 Length=12707 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 4681 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 4740 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 4741 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 4780 >seq3703 Length=9340 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || |||||| Sbjct 2614 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAATGG 2555 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| | ||| ||||| || |||||||| ||| || Sbjct 2554 --GGTCGCAGTGACCAGGCCAGGGCGACTGTGTACCAAAAACATAGGTCT 2507 >seq460139 Length=673 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| | | || || ||||||| |||||||||| ||| || | ||| Sbjct 590 CAAACCGACACAGGAGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 531 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 530 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 491 >seq864983 Length=304 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||| | || | || || ||||||| |||||||||| ||| | | ||| Sbjct 111 CAAACCGACATAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCGTGTCGAAG 170 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 171 GAACTTGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 210 >seq63997 Length=3562 Score = 75.2 bits (82), Expect = 1e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || || || || ||||||||||||||||| ||| | ||| |||| Sbjct 1947 AAACCGACACAGGTGGTTAAGTAGAGAATACTAAGGCGCTTGAGAGAACCCAGGTGAAGG 2006 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||||||| | | |||||||||||| || Sbjct 2007 AACTAGGCAAAATAGTGCCGTAACTTCGGGAGAA 2040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526691537940