Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq177849 91.5 2e-16 seq63997 73.4 7e-11 >seq177849 Length=1811 Score = 91.5 bits (100), Expect = 2e-16 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| ||| | | | |||||| |||||||||| || || ||||| Sbjct 943 TACTATGTTGAATTACTATTATGAC-ATTTTCATCAATAGGGTAAAATAAAACTATCTCA 1001 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||| | | |||| |||| |||| |||| ||||||||| ||| ||| || Sbjct 1002 CGACCGTCTAAATCTAACTCATGTTCACTATAGGTGGATGAACAATCTAACACTTGGTGA 1061 Query 121 ATTCTGCTTC 130 |||||||||| Sbjct 1062 ATTCTGCTTC 1071 >seq63997 Length=3562 Score = 73.4 bits (80), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 2943 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 2884 Query 113 CTTACCGAATTCTGCTTCGGT---ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || ||||||| | | ||| || ||||||||||||| | |||| | | Sbjct 2883 CTTGG-GAC--CTGCTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACC 2827 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 2826 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 2772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 846914516160