Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq63997 167 5e-39 seq675357 116 7e-24 seq655545 114 3e-23 seq216524 107 4e-21 seq18352 107 4e-21 seq759 107 4e-21 seq73035 84.2 4e-14 seq74522 80.6 5e-13 >seq63997 Length=3562 Score = 167 bits (184), Expect = 5e-39 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 ||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||| | Sbjct 2564 GACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGT 2623 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 | ||||| || | | || ||| | | || | |||||||||||| ||| ||| Sbjct 2624 ACGAAGATTGGCTAATCACGGTCGGACATCGTGAGGTTAGTGCAAAGGCATAAGCCAGTT 2683 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || || | |||||| |||||| || |||| |||||||| ||| | Sbjct 2684 TGACTGTGAGCGTGATAACGCGAGCAGGTGCGAAAGCAGGTCTTAGTGATCCGGTGGTTC 2743 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 2744 TGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 2790 >seq675357 Length=412 Score = 116 bits (128), Expect = 7e-24 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||||||||||| ||||| | |||| | ||| ||| | || Sbjct 409 GCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGA-TTGGCC 351 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||| ||| |||| | |||||||| | |||| | | |||||||||| | Sbjct 350 CTCGAGTGCAAAAGCAGAAGGTAGCTTGACTGCAAGACCCACCCATTGAGCAGGGACGGA 291 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 | ||| |||| ||||||| ||||| || ||||| || |||||||| |||||||||| Sbjct 290 ATTCGTCCTTAGTGATCCGATGGTGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAAT 231 Query 327 TACCCTGGGGATA 339 || || |||||| Sbjct 230 TAATCTAGGGATA 218 >seq655545 Length=428 Score = 114 bits (126), Expect = 3e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 218 AGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTA 277 ||||| ||||| | |||| ||| | |||| | ||| |||||||||||||||||| |||| Sbjct 28 AGGCAGAAGGGAGCTTGATTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTA 87 Query 278 ATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||||||| |||||| || ||||| ||| ||||||| ||||||||||| Sbjct 88 GTGATCCGACGGTGCCGAGTGGAAGGGCTGTCGCTCAACGGATAAAAG 135 >seq216524 Length=1524 Score = 107 bits (118), Expect = 4e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | || ||||||||||||||| Sbjct 13 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCATCGAGCAGGGACGAAAGTT 72 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||| | |||| || | || || ||| |||| ||||||||||| ||| Sbjct 73 GGCCTTAGTGATCTGATGGTGTCGAGTAAAAGGGTCGTTGCTCAACGGATAAAAGTTACT 132 Query 331 CTGGGGATA 339 || |||||| Sbjct 133 CTAGGGATA 141 >seq18352 Length=5992 Score = 107 bits (118), Expect = 4e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| |||| | ||||||| | |||| | ||| |||||||| ||||||| Sbjct 5340 AGTGCAAAGGCACAAGGAAGCGTGACTGCAAGACCCACCTGTCGAGCAGGGATGAAAGTC 5399 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | ||| |||| | || ||| || ||||| ||||||||||||||||||| ||| ||| Sbjct 5400 AGCCTTTGTGATTTGACGATGCCGAGTGGAAGGGCCGTCGCTCGACGGATACAAGTTACT 5459 Query 331 CTGGGGATA 339 || ||||| Sbjct 5460 CTATGGATA 5468 >seq759 Length=12707 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 5262 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 5321 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 5322 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 5376 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 5377 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 5436 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 5437 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 5487 >seq73035 Length=3316 Score = 84.2 bits (92), Expect = 4e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||||| Sbjct 6 TTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTG 65 Query 292 CTGAATGGAACGGCCGTCG 310 | || ||||| || ||||| Sbjct 66 CCGAGTGGAAGGGTCGTCG 84 >seq74522 Length=3278 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 220 GCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAAT 279 || |||| | | |||| ||| | |||| | || || ||||||||||||| | |||| | Sbjct 1770 GCCAAAGAGAGCTTGATTGCAAGACCCACCCATCGAGTAGGGACGAAAGTCAGCCTTAGT 1829 Query 280 GATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 ||||| | ||| | ||||| || |||||||| ||||||||||| ||| | ||||| Sbjct 1830 AATCCGACAGTGTCAAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTTTAGGGAT 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973793095360