Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq63997 143 3e-32 seq759 107 2e-21 seq586055 93.3 5e-17 seq130941 84.2 2e-14 seq378453 78.8 1e-12 >seq63997 Length=3562 Score = 143 bits (158), Expect = 3e-32 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 2407 CGGGGTCTTTCCGTCTTGCCGCGGGTATACTGCATCTTCACAGCAAATTCAATTTCACTG 2348 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 2347 AGTCCCAGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCC 2288 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 2287 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2257 >seq759 Length=12707 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 5117 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 5058 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 5057 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 4998 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 4997 GACAAGGAATTTCGCTACCTTAGGACAGTTA 4967 >seq586055 Length=493 Score = 93.3 bits (102), Expect = 5e-17 Identities = 122/178 (69%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||| |||| || |||| || |||||||||| || | | |||||||| | | Sbjct 381 GGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCATCGGG 322 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | |||||| ||||||| |||||||||||| ||||| ||| Sbjct 321 TCCATGTCGGAGACAACGGGGCAGTCGTTACACCACTCGTGCAGGTCGCTACTTATGCGA 262 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 261 CAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTC 204 >seq130941 Length=2291 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 40 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCACTACCTTAGGACAGTT 99 Query 173 A 173 | Sbjct 100 A 100 >seq378453 Length=853 Score = 78.8 bits (86), Expect = 1e-12 Identities = 106/149 (71%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 572 GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG- 630 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | | |||| || ||| || ||||||| |||||||| |||||||| Sbjct 631 TCTCTCTCCGAGATAGTGCCCATATCATTACGCCTTTCGTGCGGGTCGGAAGTTACCCGA 690 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| |||||| |||||| |||||| |||| Sbjct 691 CAAAGAATTTTGCTACCGTAGGACTGTTA 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542555740890