Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq801519 205 2e-50 seq533481 170 4e-40 seq177384 152 1e-34 seq466000 140 7e-31 seq411797 129 1e-27 seq176240 109 1e-21 seq174726 109 1e-21 seq524678 73.4 8e-11 >seq801519 Length=333 Score = 205 bits (226), Expect = 2e-50 Identities = 141/158 (89%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 177 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 235 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 236 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 295 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 || |||| |||||||||| ||| ||||||||||||||| Sbjct 296 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACT 333 >seq533481 Length=557 Score = 170 bits (188), Expect = 4e-40 Identities = 112/124 (90%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 11 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 70 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| |||||||||||||| |||||| ||| |||| |||||||||| Sbjct 71 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 130 Query 167 GAGC 170 ||| Sbjct 131 AAGC 134 >seq177384 Length=1815 Score = 152 bits (168), Expect = 1e-34 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| |||||| || ||||||||||||||||| |||||| Sbjct 1436 CCTTCTT-CACTCACGCGATATTGT-TGGATCGGGATTTCGCCCATTGTCCAAGATTCCC 1493 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| |||| |||||| || |||||||||||| |||||||| |||||||||| Sbjct 1494 CACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 1553 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 ||||||| || | ||| | | |||||| |||| || Sbjct 1554 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 1591 >seq466000 Length=662 Score = 140 bits (154), Expect = 7e-31 Identities = 96/107 (90%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 557 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 615 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 616 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 662 >seq411797 Length=772 Score = 129 bits (142), Expect = 1e-27 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 |||||| ||| ||| ||| |||| ||||||| |||||||||||||||||||| ||||||| Sbjct 673 CTTCTT-CACTCACACGGTATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCC 616 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||| |||| |||||| || | | |||||||| |||||||| ||||||||| Sbjct 615 ACTGCTGCCCCCCGCGGGAGTCCGGGCTGCGTCTCAGTCCCAGTGTGGTTGATCATCC 558 >seq176240 Length=1825 Score = 109 bits (120), Expect = 1e-21 Identities = 118/156 (76%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||| |||||||| ||||| || ||||| || |||||||| |||| ||||||| | || Sbjct 207 TCAGACTTTCGCCTATTGTGGAAAATTCCTCATTGCTGCCTTCCGTGGGAGTCTAGGTCG 148 Query 107 TGTCTCAGTTCCAGTGTGACTG--------ATCATCCTCTCAGACCAGTTACGGATCGTC 158 ||||||| | |||||||| || ||||||||||||||||| ||| ||| | Sbjct 147 TGTCTCAATCCCAGTGTGGTTGTGTGGTTGATCATCCTCTCAGACCAACTACTAATCATT 88 Query 159 GCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | ||||| | ||||| || |||||||||||||| Sbjct 87 GAATTGGTAAATTATTACATC-CCAACTAGCTAATC 53 >seq174726 Length=1838 Score = 109 bits (120), Expect = 1e-21 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || | ||||||||| | ||||| || ||| ||||| || |||| Sbjct 1437 CATGCGGCATTG-CTCCACCAGGCTTTCACACATTGCAGAAAATTATCCACTACTACCTC 1495 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| ||||||||||| ||| |||| |||| ||||||| |||||| | Sbjct 1496 CCGTAGGAGTCTGGGTCGTGTCTCAGTCCCAATGTGGTTGATTATCCTCTTGGACCAGCT 1555 Query 149 ACGGATCGTC 158 || |||| || Sbjct 1556 ACTGATCATC 1565 >seq524678 Length=569 Score = 73.4 bits (80), Expect = 8e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126 ||| |||||||||||||||| |||| |||||| |||||||||||||| |||||||| Sbjct 299 CAAGATTCCCCACTGCTGCC-CCCGCGGGAGTCCAGACCGTGTCTCAGTCCCAGTGTGGT 357 Query 127 TGATC 131 ||||| Sbjct 358 TGATC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062608100800