Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04]
876,110 sequences; 1,133,657,130 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq801519 205 2e-50
seq533481 170 4e-40
seq177384 152 1e-34
seq466000 140 7e-31
seq411797 129 1e-27
seq176240 109 1e-21
seq174726 109 1e-21
seq524678 73.4 8e-11
>seq801519
Length=333
Score = 205 bits (226), Expect = 2e-50
Identities = 141/158 (89%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 177 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 235
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 236 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 295
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186
|| |||| |||||||||| ||| |||||||||||||||
Sbjct 296 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACT 333
>seq533481
Length=557
Score = 170 bits (188), Expect = 4e-40
Identities = 112/124 (90%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 11 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 70
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||||||| |||||||| |||||||||||||| |||||| ||| |||| ||||||||||
Sbjct 71 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 130
Query 167 GAGC 170
|||
Sbjct 131 AAGC 134
>seq177384
Length=1815
Score = 152 bits (168), Expect = 1e-34
Identities = 130/158 (82%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
||||||| ||| |||||| |||| |||||| || ||||||||||||||||| ||||||
Sbjct 1436 CCTTCTT-CACTCACGCGATATTGT-TGGATCGGGATTTCGCCCATTGTCCAAGATTCCC 1493
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|||||||||| |||| |||||| || |||||||||||| |||||||| ||||||||||
Sbjct 1494 CACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 1553
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174
||||||| || | ||| | | |||||| |||| ||
Sbjct 1554 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 1591
>seq466000
Length=662
Score = 140 bits (154), Expect = 7e-31
Identities = 96/107 (90%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 557 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 615
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
|||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 616 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 662
>seq411797
Length=772
Score = 129 bits (142), Expect = 1e-27
Identities = 101/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77
|||||| ||| ||| ||| |||| ||||||| |||||||||||||||||||| |||||||
Sbjct 673 CTTCTT-CACTCACACGGTATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCC 616
Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
||||||||| |||| |||||| || | | |||||||| |||||||| |||||||||
Sbjct 615 ACTGCTGCCCCCCGCGGGAGTCCGGGCTGCGTCTCAGTCCCAGTGTGGTTGATCATCC 558
>seq176240
Length=1825
Score = 109 bits (120), Expect = 1e-21
Identities = 118/156 (76%), Gaps = 9/156 (6%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||| |||||||| ||||| || ||||| || |||||||| |||| ||||||| | ||
Sbjct 207 TCAGACTTTCGCCTATTGTGGAAAATTCCTCATTGCTGCCTTCCGTGGGAGTCTAGGTCG 148
Query 107 TGTCTCAGTTCCAGTGTGACTG--------ATCATCCTCTCAGACCAGTTACGGATCGTC 158
||||||| | |||||||| || ||||||||||||||||| ||| ||| |
Sbjct 147 TGTCTCAATCCCAGTGTGGTTGTGTGGTTGATCATCCTCTCAGACCAACTACTAATCATT 88
Query 159 GCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
| ||||| | ||||| || ||||||||||||||
Sbjct 87 GAATTGGTAAATTATTACATC-CCAACTAGCTAATC 53
>seq174726
Length=1838
Score = 109 bits (120), Expect = 1e-21
Identities = 103/130 (79%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|| ||||||||| || | ||||||||| | ||||| || ||| ||||| || ||||
Sbjct 1437 CATGCGGCATTG-CTCCACCAGGCTTTCACACATTGCAGAAAATTATCCACTACTACCTC 1495
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| ||||||||||| ||| |||| |||| ||||||| |||||| |
Sbjct 1496 CCGTAGGAGTCTGGGTCGTGTCTCAGTCCCAATGTGGTTGATTATCCTCTTGGACCAGCT 1555
Query 149 ACGGATCGTC 158
|| |||| ||
Sbjct 1556 ACTGATCATC 1565
>seq524678
Length=569
Score = 73.4 bits (80), Expect = 8e-11
Identities = 56/65 (86%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126
||| |||||||||||||||| |||| |||||| |||||||||||||| ||||||||
Sbjct 299 CAAGATTCCCCACTGCTGCC-CCCGCGGGAGTCCAGACCGTGTCTCAGTCCCAGTGTGGT 357
Query 127 TGATC 131
|||||
Sbjct 358 TGATC 362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062608100800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |