Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq63997 399 5e-109 seq116347 136 1e-29 seq722770 116 9e-24 seq72042 104 6e-20 seq759 102 2e-19 seq855333 95.1 3e-17 seq683339 93.3 1e-16 seq213709 91.5 4e-16 seq4692 89.7 1e-15 seq369095 77.0 8e-12 >seq63997 Length=3562 Score = 399 bits (442), Expect = 5e-109 Identities = 345/416 (83%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||| ||||||| ||||| | ||||||||| ||||||||||||||||||||| || || Sbjct 1104 CCATAGGTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGTCCTCCAGTTGGTT-TT 1048 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||| | || |||||| || ||||| ||||||| | ||| | Sbjct 1047 ACCCAACCTT-CAACCTGCCCGT-GGCTAGATCACCGGGTTT-CGGGTCTGTA-CCCTGA 992 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| ||||| || |||||| ||| | || || |||||||||| |||||| ||| | Sbjct 991 AACTTAACGCCTATTTAGGACTCGGTTTCC-CTTCGGCTCCCCTATTTGGTTAACCTT-G 934 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA------ 242 | || || | ||||||||||||||||||||||||||||||||||||| | | Sbjct 933 CTACAGAGTACAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACATATTATTTTAA 874 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || | ||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||| Sbjct 873 AACTATGCTTCCACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCGCCG 814 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 813 GGGTTCTTTTCGCCTTTCCCTTACGGTACTAGTTCACTATCGGTCAGTCAGGAGTATTTA 754 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||| ||| ||||||||| ||| ||||| Sbjct 753 GCCTTGGAGGATGGTCCCCCCATATTCAAACAGGATTTCTCGTGTCCCGCTCTACT 698 >seq116347 Length=2490 Score = 136 bits (150), Expect = 1e-29 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCTCCCAC 256 ||||||||| || |||| | ||| ||| | ||||||| | | | | |||| || Sbjct 2253 ATAAGTCGCCGATTCATTCTTCAACAGGCATGCAGTCAGAGCCTCGAGCTC--CTCCTAC 2310 Query 257 TGCTT-GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGC 315 ||| ||| || |||||||||| | ||||||||||||||| | |||||||||||| | Sbjct 2311 GACTTAGTA-GCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCAC 2368 Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375 | |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | || Sbjct 2369 CCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTG 2428 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | ||||| || || | ||||| || | ||||||| Sbjct 2429 GTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2473 >seq722770 Length=379 Score = 116 bits (128), Expect = 9e-24 Identities = 241/340 (71%), Gaps = 24/340 (7%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||||| ||| | || |||||| |||| |||||| ||||| || | | | Sbjct 57 CCACAACTCATTC-GCTGA-TTCTTCAACATCAGTCTGTTCGGAACTCCACTTGG-ATTC 113 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || | ||| ||| | |||||| ||| | || || ||| || || Sbjct 114 ACCTAAGCTT-CATCTTGCTCAT-GAATAGATGACCCAGGTT-CGAGTCCATA----AG- 165 Query 129 GACTAGACG----CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAA 182 || | ||| ||||| | ||||||||||| || ||| |||| | ||| |||| Sbjct 166 GATT-GACAATTTCCCTATGACGACTCGCTTTT-GCAACGGCTCCGGTGGGTTCCCTTAA 223 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | Sbjct 224 CCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCC 280 Query 243 AAGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | | | |||||||||||| || |||||||||| | ||||||||||||||| | Sbjct 281 CCGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-G 339 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||||||||| || |||||||||||||||| ||| ||| Sbjct 340 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA 379 >seq72042 Length=3342 Score = 104 bits (114), Expect = 6e-20 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 || |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||| Sbjct 3204 TCGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTA 3263 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||| | | |||||| | ||||| || || | ||||| || | ||||| Sbjct 3264 TTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACT 3323 Query 419 CG 420 || Sbjct 3324 CG 3325 >seq759 Length=12707 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 3185 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 3127 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 3126 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 3067 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 3066 GTGGTCCCCC 3057 >seq855333 Length=308 Score = 95.1 bits (104), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | || || ||| ||| |||||| | | |||||||||| Sbjct 149 ACTGATTGTTCGCATCGGATCTCTGGTTCTCTATTGAACTCCC-TAACTAGGGTTCTTTT 91 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 90 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 31 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 30 -TGGTCCCCC 22 >seq683339 Length=406 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| | ||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 205 ACTGATTGTTCACATCAGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 147 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||| | | || | || |||| ||| |||| Sbjct 146 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTAATTAAGGAATACTTAGGCTTAGAGG 87 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 86 GTGGTCCCCC 77 >seq213709 Length=1542 Score = 91.5 bits (100), Expect = 4e-16 Identities = 150/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||||||| |||||| ||||| | |||||| | |||| |||| Sbjct 312 TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAGC-TTCATCCTGGT 255 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| | |||||||| | | ||| ||| | |||||| |||| Sbjct 254 CAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGTGAC-AATTGCCCTATGAAGA 199 Query 149 CTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 ||||| |||||||||| |||| | ||| |||| | ||||||| || |||||| Sbjct 198 CTCGC-TTTCGCTACGGCTCCGGTGGGTTCCCTTAA-CCAAGCCACTGCCTATGAGTCGC 141 Query 207 TGACCCATTATACAAAAGGTACGCA 231 | | |||| | ||| ||| ||||| Sbjct 140 CGGCTCATTCTTCAACAGGCACGCA 116 >seq4692 Length=8834 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 43 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GGGGGTTCT 101 Query 310 TTTCGCCTTTCCCTCACGGTA 330 |||| || ||||||||||||| Sbjct 102 TTTCACCCTTCCCTCACGGTA 122 >seq369095 Length=879 Score = 77.0 bits (84), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTT--CACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | |||| || ||| | | ||||||| | |||||||||| Sbjct 633 ACTGATTGTTCGCATTGGATTTCCGGTTCTTTGTTGCACTCCC-TAAATAGGGTTCTTTT 575 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | ||||| ||||| |||||| || |||||||||| | || | || |||| ||| |||| Sbjct 574 CACCTTT-CCTCATGGTACTTGTATGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 516 Query 373 ATGGTCCCCC 382 || |||||| Sbjct 515 GTGATCCCCC 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1230722218240