Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq801519 170 4e-40 seq533481 147 4e-33 seq466000 120 6e-25 seq177384 107 4e-21 seq174726 98.7 2e-18 seq411797 91.5 3e-16 seq498636 73.4 8e-11 >seq801519 Length=333 Score = 170 bits (188), Expect = 4e-40 Identities = 129/152 (85%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 182 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 241 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 242 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 301 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||| ||||||| |||||||||| Sbjct 302 CATCGCCTTGGTAAGCTATTACCTCACCAACT 333 >seq533481 Length=557 Score = 147 bits (162), Expect = 4e-33 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 5 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 64 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| Sbjct 65 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGC 124 Query 127 CTTGGTGGGCTATT 140 |||||| ||| || Sbjct 125 CTTGGTAAGCTGTT 138 >seq466000 Length=662 Score = 120 bits (132), Expect = 6e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 562 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 621 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||||||||||||||||||||| |||||| | ||| || Sbjct 622 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 662 >seq177384 Length=1815 Score = 107 bits (118), Expect = 4e-21 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || |||| |||||||| ||| || ||||||||||||| |||| |||||| || Sbjct 1460 TGGATCGGGATTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGG 1519 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 ||||||||||||||||| |||||| | ||| || || || |||| ||| | |||| Sbjct 1520 GCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCT 1579 Query 129 TGGT 132 |||| Sbjct 1580 TGGT 1583 >seq174726 Length=1838 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| || |||| |||| | ||||| || || ||||| || |||||||||| Sbjct 1442 GGCATTGCTCCACCAGGCTTTCACACATTGCAGAAAATTATCCACTACTACCTCCCGTAG 1501 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| ||||||||||||||||||||| | | | ||||| | || ||||| ||| Sbjct 1502 GAGTCTGGGTCGTGTCTCAGTCCCAATGTGGTTGATTATCCTCTTGGACCAGCTACTGAT 1561 Query 121 CGTC 124 | || Sbjct 1562 CATC 1565 >seq411797 Length=772 Score = 91.5 bits (100), Expect = 3e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| |||| |||||| Sbjct 652 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCC 593 Query 67 GGGCCGTGTCTCAGTCCCAATGTGG 91 |||| | |||||||||||| ||||| Sbjct 592 GGGCTGCGTCTCAGTCCCAGTGTGG 568 >seq498636 Length=607 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 117 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 59 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 58 CTCACCCGTCCGCCACT 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989652917760