Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq136804 168 2e-39 seq63997 168 2e-39 seq759 167 5e-39 seq837592 158 3e-36 seq623229 158 3e-36 seq427514 120 7e-25 seq859800 111 4e-22 seq27986 107 4e-21 seq241325 89.7 1e-15 seq787015 86.0 1e-14 seq23623 82.4 2e-13 seq3707 73.4 9e-11 >seq136804 Length=2219 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 221 GATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGC 280 ||| |||||| || || | ||| ||||||| | | || || |||||||||||||||| Sbjct 1981 GATCACTTAA-CCTCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGC 2038 Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340 |||||||||||| |||||||||| | || |||||||||| ||||| ||| | | || || Sbjct 2039 ACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTC 2098 Query 341 CTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| ||||||| | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 2099 CTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 2158 >seq63997 Length=3562 Score = 168 bits (186), Expect = 2e-39 Identities = 288/413 (70%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| || || |||| | | || ||| | Sbjct 1715 CGACTACGCTTTTCAGCCTCGCCTTAGGGGTCGGCTTACCCTGCCCCGATTAACGTTGGA 1656 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||||| | |||||| | || || |||| | | || |||||||| | Sbjct 1655 CAGGAAACCTTGGTTTTTCGGCGAGCAGGTTTTTCACCTGCTTTATCGTTACTCATGTCA 1596 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | | || | |||| | || ||| Sbjct 1595 GCATTCGCACTTCTGAT-ACCTCCAACATATTTT-ACAATATATCTTCTCTGGCTTACAG 1538 Query 178 GACGCTCCCCTACCCAACCACACAGGTT-----------GCCACAGCTTCGGCGGATAAC 226 ||||||||||||||| | | | | | ||| ||||||||| | ||| Sbjct 1537 AACGCTCCCCTACCCAGCAAAAAAAAATATATTTTCACTGCCGCAGCTTCGGTGCATAGT 1478 Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286 || ||||||| || || || |||| | ||||||||||||||||||||||| |||| Sbjct 1477 TTGAGCCCCGTTATATCTTCCGCGCAGGCCGACTTGACCAGTGAGCTATTACGCTTTCTT 1418 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCC 346 | || |||||||||||| |||||||| |||||| ||| || || ||||||| ||||| Sbjct 1417 TAAATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTTTATGCCTTCCCACATCGTTTCC 1358 Query 347 CACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 |||| | | |||| ||| ||||||||| | |||||| ||||||||| || Sbjct 1357 CACTTAACTATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTTTC 1305 >seq759 Length=12707 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 3843 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 3787 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 3786 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 3727 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 3726 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 3667 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 3666 GTTTCCCTCTCG 3655 >seq837592 Length=316 Score = 158 bits (174), Expect = 3e-36 Identities = 151/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 5 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 61 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||||||| |||| ||||| |||||||||||||| || Sbjct 62 GAGCTATTACGCTTTCTTCAAAGGATGGCTTCTTCGAAGCCCACCTCCTGGTTGTCATCG 121 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 122 CTTGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 181 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 182 GTTTCCCTCTCG 193 >seq623229 Length=456 Score = 158 bits (174), Expect = 3e-36 Identities = 151/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 452 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 396 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| ||||| | |||||| || Sbjct 395 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCTTAGTTGTCATCG 336 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 335 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 276 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 275 GTTTCCCTCTCG 264 >seq427514 Length=738 Score = 120 bits (132), Expect = 7e-25 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||| || |||||||| |||||||||||| ||||||||||| || Sbjct 568 GTGAGCTATTACGCTTTCGACAAAGGATGGTTGCTTCCAAGCCCACCTCCTGGTTTTCAT 627 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||| Sbjct 628 CGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGG 687 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 688 CTGTTTCCCTCTCG 701 >seq859800 Length=306 Score = 111 bits (122), Expect = 4e-22 Identities = 94/113 (83%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || || Sbjct 78 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 135 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG 319 |||||||||||||||||||||||||| |||||||||| | || |||||||||| Sbjct 136 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGG 188 >seq27986 Length=5166 Score = 107 bits (118), Expect = 4e-21 Identities = 94/116 (81%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 5051 GCTTCGGTGAATCACTTGAGCCCTGAAACATTTTCGGTGCCATGGAG---CTAGACCAGT 5107 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| Sbjct 5108 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTC 5163 >seq241325 Length=1377 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| | || || ||| || ||||||| Sbjct 6 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTTGGTGCCATGGAG---CTAGACCAGT 62 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||| |||| |||||||| ||||||||| || ||||| ||||| || Sbjct 63 GAGCTATTACGCTTTCTTCAAAGGATGGTTGCTTCCAATCCCACCTCTTGGTTTTC 118 >seq787015 Length=341 Score = 86.0 bits (94), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 12/114 (11%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACAT-TATCGGCGCGGAATCACTTGACC 265 ||||||||||||| ||| |||| |||||| | ||| || | ||| || || | Sbjct 160 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTA---GAGCG------CTCGATC 112 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG 319 |||||||||||||||||||| |||||| |||||||||| | || |||||||||| Sbjct 111 AGTGAGCTATTACGCACTCTATCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGG 58 >seq23623 Length=5493 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 276 TACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC 335 ||||||||||||||||| |||||||||| | || |||||||||| ||||| || || | Sbjct 1630 TACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC-ACCCT 1688 Query 336 ACATCCTTTCCCACTGAGTCACCACTTAGG 365 || |||||| ||||||| | || ||||| Sbjct 1689 ACCTCCTTTATCACTGAGCAATCATTTAGG 1718 >seq3707 Length=9336 Score = 73.4 bits (80), Expect = 9e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||| |||||||||||||||||||||| ||||| |||||||||| | | |||||| || Sbjct 5080 CTTGATCAGTGAGCTATTACGCACTCTTACAAGGGTGGCTGCTTCTAGGAAAACCTCATG 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1167282928640