Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq948 100 2e-19 seq358679 84.2 2e-14 seq39264 78.8 8e-13 seq404710 75.2 9e-12 seq270775 75.2 9e-12 >seq948 Length=12232 Score = 100 bits (110), Expect = 2e-19 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 72 CTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGA 131 ||||||| | |||||||| ||||||| |||| ||||||| ||||||| |||||||| Sbjct 9879 CTCTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCATGCGGACTTGA 9820 Query 132 CGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||| || | |||| Sbjct 9819 CGTCATCCCCACCTTCCTCCAGTATATCAC 9790 >seq358679 Length=908 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||||| ||||| ||||||||||||||| || Sbjct 903 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 844 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 843 CCTTCCTCCGGCTTATCAC 825 >seq39264 Length=4495 Score = 78.8 bits (86), Expect = 8e-13 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 74 CTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACG 133 || ||||| |||||||| ||||||| |||| ||||||| ||||||| |||||||||| Sbjct 4321 CTTTATGTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCATGCGGACTTGACG 4380 Query 134 TCATCCCC 141 |||||||| Sbjct 4381 TCATCCCC 4388 >seq404710 Length=789 Score = 75.2 bits (82), Expect = 9e-12 Identities = 114/160 (71%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||| ||| | | |||||||| ||| || || ||| | | Sbjct 152 CGAGTTGCAGAGAACAATCTAAACTGAGGAAATCTTTCTGG-ATTCGCCCCGCCTTACAG 210 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||| || ||||||| || | | ||||| |||||| Sbjct 211 CCTTGCTTCCCATTGTAATTGTCATTATAGCACGTGTGTGGCAC-AGTCATAAAGGCCAT 269 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | ||| ||||||||||||||||||| || || | |||| Sbjct 270 GCGAACTCGACGTCATCCCCACCTTCCACCAGTATATCAC 309 >seq270775 Length=1228 Score = 75.2 bits (82), Expect = 9e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| |||||||| ||||| ||||||||||||||| |||||||||||| Sbjct 1103 ACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCG 1162 Query 153 GTTTGTCAC 161 | || |||| Sbjct 1163 GCTTATCAC 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412469276700