Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq543186 136 6e-30 seq815756 129 1e-27 seq801519 109 9e-22 seq606760 105 1e-20 seq863399 91.5 2e-16 seq257910 87.8 3e-15 seq688445 84.2 4e-14 seq781053 73.4 6e-11 seq213685 73.4 6e-11 >seq543186 Length=544 Score = 136 bits (150), Expect = 6e-30 Identities = 204/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 252 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 311 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| ||||||| |||| |||||||| ||||||||| |||||| | ||||| ||| Sbjct 312 TCCTTCGTATATTTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 371 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 372 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 426 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || || | |||| ||| ||||||||| |||| | | |||| | ||| ||| || || Sbjct 427 ACCTGATTCACCGCTTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTCCCCCCC 486 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 487 -CGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 533 >seq815756 Length=326 Score = 129 bits (142), Expect = 1e-27 Identities = 187/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 63 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 122 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||| | ||| |||||| |||| || | | ||| || Sbjct 123 CCGATCTCTACGCATTTCACCGTTCCACCGAAAATTCCCTCTGCCCCTACTGTACTAGAG 182 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||| | | ||||||||| | ||| || | ||||| Sbjct 183 CTTGGTAGTTTCCACTGCTTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 242 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 243 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 302 Query 246 CCGCGGCTGCTGGCACGTAGTTAG 269 |||||||||||||||| |||||| Sbjct 303 CCGCGGCTGCTGGCACAGAGTTAG 326 >seq801519 Length=333 Score = 109 bits (120), Expect = 9e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||||| Sbjct 18 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACC 77 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||||||| ||| || Sbjct 78 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 120 >seq606760 Length=472 Score = 105 bits (116), Expect = 1e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||| ||||||||||| ||| |||||||| Sbjct 169 CCACCTACAGACGCTTTACGCCCAATCATTCCGAATAACGCTTGCATCCTCTGTATTACC 110 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||||||| ||| || Sbjct 109 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 67 >seq863399 Length=305 Score = 91.5 bits (100), Expect = 2e-16 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 243 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 184 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||| ||||| ||||||| ||| | |||||| | | || | | |||| || Sbjct 183 CCGATGTCTATGCATTACACCGCTCCACCGGAAATTCCCTCTACTCCTACCGTACTCCAG 124 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | | ||||||||| | ||| || | ||||| Sbjct 123 CTTGGTAGTTTCCACCGCCTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 64 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 63 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 4 Query 246 CCG 248 ||| Sbjct 3 CCG 1 >seq257910 Length=1290 Score = 87.8 bits (96), Expect = 3e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252 |||| | |||||| || ||| | |||||||||||||||| ||| ||||||||| ||| Sbjct 102 TACAAACACTTTACGCCTAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGTGGC 161 Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 | ||||||| ||||||||| ||||||||| Sbjct 162 TTCTGGCACAGAGTTAGCCGATGCTTATTCC 192 >seq688445 Length=402 Score = 84.2 bits (92), Expect = 4e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| ||||| Sbjct 21 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 80 Query 248 GCGGCTGCTGGCACGTAGTTA 268 ||||||||||||||| ||||| Sbjct 81 GCGGCTGCTGGCACGGAGTTA 101 >seq781053 Length=344 Score = 73.4 bits (80), Expect = 6e-11 Identities = 130/188 (69%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 72 TCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAAC 131 |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 2 TCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGT 61 Query 132 AGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGC 191 |||||| | || | | ||||||||| | ||| || | ||||| || | Sbjct 62 AGTTTCCACCGCCTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCAC 121 Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC--CACCTACGTATTACCGC 249 ||||| | |||||| |||||| | || |||||| ||||| | |||| ||||||||| Sbjct 122 CTACAGACGCTTTACGCCCAATCATTCAAGATAACTCTTGCATCCCCTA--TATTACCGC 179 Query 250 GGCTGCTG 257 | |||||| Sbjct 180 GACTGCTG 187 >seq213685 Length=1542 Score = 73.4 bits (80), Expect = 6e-11 Identities = 88/120 (73%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 163 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 104 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 103 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 821765712810