Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq63997 253 3e-65 seq759 199 6e-49 seq317484 163 4e-38 seq74522 163 4e-38 seq30339 138 2e-30 seq527481 122 1e-25 seq696453 91.5 2e-16 seq455194 78.8 1e-12 >seq63997 Length=3562 Score = 253 bits (280), Expect = 3e-65 Identities = 215/265 (81%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||| |||| |||||| |||||| |||| | |||||| || || |||| | Sbjct 3105 TTCGTGCTTATATGCGTTCAGCGCTTATCTTTTCCGCATTTAGCTACCGGGCAATGCTAT 3046 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| | | ||||| |||||||||||||||| ||| Sbjct 3045 TGGCATAACAACCCGAACACCAGTGATGCGTCCACTTCGGTCCTCTCGTACTAGAAGCAG 2986 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || ||||| |||| ||||||||| | |||||||||||||||||||| ||||||||| Sbjct 2985 CCCCCCTCAATCTTCCAACGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 2926 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||||||| || |||||| ||||||||||| ||||||||||||| ||||||| Sbjct 2925 AACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTGCTTCAGC 2866 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 2865 CCCAGGATGTGATGAGCCGACATCG 2841 >seq759 Length=12707 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 5788 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 5729 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 5728 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 5669 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 5668 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 5609 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 5608 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 5549 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 5548 AGTCGACATCG 5538 >seq317484 Length=1038 Score = 163 bits (180), Expect = 4e-38 Identities = 163/211 (77%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 ||||||| ||||| ||| ||||| ||||| | ||| ||| |||||||||||||| || Sbjct 1015 CTTGGCATAACAACCGGTACACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTT 956 Query 129 AGCTCCTCTCAAATTTCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 |||| || || | ||| || || ||| |||| | ||||||||||||| ||| Sbjct 955 GGCTCATCCCAGTTCTCCCTTTAACACCAACGGTAGATAAGAACCGAACTGTCTCATGAC 896 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 ||||| |||||| ||| ||| || | | ||| |||||||| || |||||||||||||| | Sbjct 895 GTTCTAAACCCAACTCACGTACCACCTGAATCGGCGAACAACCGAACCCTTGGGACCTTC 836 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| ||||| |||| || ||| |||||||| Sbjct 835 TTCAACCCCATGATGTGATGAGTCGACATCG 805 >seq74522 Length=3278 Score = 163 bits (180), Expect = 4e-38 Identities = 160/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| || |||||| |||| ||||| || ||| |||||| ||| || Sbjct 2141 GGCATGATAACTGGTATACTAGAGGTGCGTCCTTCCCGTTCATCTTGTACTAGGGA-AGG 2083 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || || ||||| | |||| ||||||||||||||| || |||||||| Sbjct 2082 TCCTCTCAATGCTCTAACACCCACACCAGATATGGACCGAACTGTCTCTCGGCGTTCTGA 2023 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || ||||||| |||||||| |||||||||||| || |||| | | Sbjct 2022 ACCCAGCTCACGTACCACTTTAATAGGCGAACAACCCAACCCTTGGAACATACTATA-AC 1964 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||| | | || |||| ||||||| Sbjct 1963 CCAAGTGGTGAAGAGCTGACATCG 1940 >seq30339 Length=5004 Score = 138 bits (152), Expect = 2e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| |||||||||||||||||||| || | ||||||||| Sbjct 5 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCATGTATCGCTTTAATGG 64 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||||| || |||| |||||| ||| | || |||||| ||||| Sbjct 65 GCGAACAGCCCAACCCTTGGAACATACTACAGCCCTAGGTGGCGAAGAGCCG-CATCG 121 >seq527481 Length=565 Score = 122 bits (134), Expect = 1e-25 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||||| ||| |||||| | ||| || ||||| ||||| | | | | Sbjct 186 AACTTAGCTACCCAGTGCTGCTATTGGCATAATAACCAGTACACCATAGGTTGGCCTAAC 127 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 126 CCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGAT 67 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||||||||||||| ||||||||| |||||| ||| ||| || ||| ||| || ||| Sbjct 66 AGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGAGAA 7 Query 223 CAGCC 227 || || Sbjct 6 CAACC 2 >seq696453 Length=396 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||| || |||||| ||| ||||| |||||| ||| ||| || ||| ||| |||||||| | Sbjct 245 ACCAAATTGTCTCACGATGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAAC 304 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 | |||||||||||||| ||| | ||||| ||| || ||| Sbjct 305 CGAACCCTTGGGACCTTCTTAAACCCCATGATATGATGAG 344 >seq455194 Length=682 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 213 AATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACA 272 ||| |||||||| || |||||||||||||| ||||| |||||||||| || ||| ||||| Sbjct 587 AATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACA 646 Query 273 TCG 275 ||| Sbjct 647 TCG 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774173103960