Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq801519 206 6e-51 seq533481 167 6e-39 seq466000 154 4e-35 seq177384 138 3e-30 seq411797 123 6e-26 seq174726 118 3e-24 seq176240 100 7e-19 seq524678 73.4 1e-10 >seq801519 Length=333 Score = 206 bits (228), Expect = 6e-51 Identities = 152/177 (86%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 157 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 216 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 217 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 276 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 |||||||||| ||||||||| |||| |||||| ||| || |||||| | |||||| Sbjct 277 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACT 333 >seq533481 Length=557 Score = 167 bits (184), Expect = 6e-39 Identities = 115/130 (88%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 38 CATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGA 97 ||| ||| | |||||||| ||||||||| | || |||||||||||||||||||||||||| Sbjct 1 CATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGA 60 Query 98 GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG 157 |||||| |||||||||||| |||||||||||| |||||||||| ||||||||| |||| Sbjct 61 GTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCA 120 Query 158 TCGCCTAGGT 167 |||||| ||| Sbjct 121 TCGCCTTGGT 130 >seq466000 Length=662 Score = 154 bits (170), Expect = 4e-35 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||| | | |||||||||| ||| | |||||||| ||||||||| | || ||||||| Sbjct 545 GCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCC 604 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| Sbjct 605 ACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 662 >seq177384 Length=1815 Score = 138 bits (152), Expect = 3e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || | || ||| || || |||||||||| ||| |||||||| Sbjct 1436 CCTTCTTCACTCACGCGATATTGTTGGATCGGGATTTCGCCCATTGTCCAAGATTCCCCA 1495 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| |||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 1496 CTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 1555 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATT 175 |||||||||| | ||| | | || ||| ||| || Sbjct 1556 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 1591 >seq411797 Length=772 Score = 123 bits (136), Expect = 6e-26 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||||||| ||| ||| || |||| ||| ||||| |||||||||| ||| ||||||||| Sbjct 673 CTTCTTCACTCACACGGTATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCAC 614 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| |||| |||||| || | | |||||||| ||||||||| || |||||| Sbjct 613 TGCTGCCCCCCGCGGGAGTCCGGGCTGCGTCTCAGTCCCAGTGTGGTTGATCATCCGAAA 554 Query 141 AGACCAGCTAGGGATC 156 |||||| ||| | ||| Sbjct 553 AGACCAACTAAGCATC 538 >seq174726 Length=1838 Score = 118 bits (130), Expect = 3e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||| | | || ||||||| ||| || ||||||| | | ||||| || ||| ||| Sbjct 1426 CCTTCTACTTCCATGCGGCATTGCTCCACCAGGCTTTCACACATTGCAGAAAATTATCCA 1485 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 || || |||||||||||||||||| ||||||||||| ||| ||||| || | ||||||| Sbjct 1486 CTACTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTCCCAATGTGGTTGATTATCCTCT 1545 Query 140 CAGACCAGCTAGGGATCGTC 159 ||||||||| |||| || Sbjct 1546 TGGACCAGCTACTGATCATC 1565 >seq176240 Length=1825 Score = 100 bits (110), Expect = 7e-19 Identities = 134/186 (72%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 ||| |||| | | || | ||||| || |||| ||| |||| |||||| || ||||| Sbjct 237 GGCATTCTACCTCCAGGTGGCATTACTCTGTCAGACTTTCGCCTATTGTGGAAAATTCCT 178 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG------- 130 || |||||||| |||| ||||||| | ||||||||| | ||||||||| || Sbjct 177 CATTGCTGCCTTCCGTGGGAGTCTAGGTCGTGTCTCAATCCCAGTGTGGTTGTGTGGTTG 118 Query 131 -TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAG 189 |||||||||||||||| ||| ||| | | | ||| ||||| | |||||||| Sbjct 117 ATCATCCTCTCAGACCAACTACTAATCATTGAATTGGTAAATTATTACATC-CCAACTAG 59 Query 190 CTAATC 195 |||||| Sbjct 58 CTAATC 53 >seq524678 Length=569 Score = 73.4 bits (80), Expect = 1e-10 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||| |||||||||||||||| |||| |||||| |||||||||||||| ||||||||| Sbjct 299 CAAGATTCCCCACTGCTGCC-CCCGCGGGAGTCCAGACCGTGTCTCAGTCCCAGTGTGGT 357 Query 128 TGGTC 132 || || Sbjct 358 TGATC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1211690431360