Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq801519 302 1e-79 seq533481 165 2e-38 seq411797 161 3e-37 seq177384 161 3e-37 seq174726 147 6e-33 seq466000 132 1e-28 seq606760 113 1e-22 seq543186 104 7e-20 seq815756 98.7 3e-18 seq176240 96.9 1e-17 seq136699 89.7 2e-15 seq688445 87.8 5e-15 seq34001 87.8 5e-15 >seq801519 Length=333 Score = 302 bits (334), Expect = 1e-79 Identities = 265/328 (81%), Gaps = 3/328 (1%) Strand=Plus/Minus Query 175 AGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCG 234 ||||||| |||||| |||||||||||||| |||||||||| | | |||||| ||||| Sbjct 333 AGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCA 274 Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 273 GCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTC 214 Query 295 CACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGT 354 | |||||||| ||||||||| | ||||| |||||||| | ||||||| |||||| | Sbjct 213 CGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCAT 154 Query 355 AAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 || ||| | | | ||||| |||||||||| || ||| |||| ||||||||| Sbjct 153 GAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACT 94 Query 413 ACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGT 472 |||||||||||||||||||||| ||| || ||||||||||||||| | | |||||| Sbjct 93 CTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGT 35 Query 473 AAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| || |||||||| || ||||||| Sbjct 34 AAAGCGTCTGTAGGTGGCTTTTTAAGTC 7 >seq533481 Length=557 Score = 165 bits (182), Expect = 2e-38 Identities = 118/136 (87%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 187 AACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAA 246 ||| |||||||||||||| |||||||||| | | |||||| ||||| |||||| ||| | Sbjct 138 AACAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGA 79 Query 247 CTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAA 306 ||||||||||| ||| |||||||||||||||||||||||||||| || | |||||||| | Sbjct 78 CTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGA 19 Query 307 AAGCCTGATGCAGCAA 322 |||||||| | ||||| Sbjct 18 AAGCCTGACGGAGCAA 3 >seq411797 Length=772 Score = 161 bits (178), Expect = 3e-37 Identities = 165/214 (77%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| ||||| ||| |||||||| | | || ||||| |||| ||||||||||| Sbjct 558 GGATGATCAACCACACTGGGACTGAGACGCAGCCCGGACTCCCGCGGGGGGCAGCAGTGG 617 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA--AGGC 343 ||||| ||| ||||||||| |||||| ||| |||||| ||| ||||| || || || Sbjct 618 GGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATACCGTGTGAGTGAAGAAGAGTA 677 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | | |||||||||| || || || || ||||| ||||||||| |||||| Sbjct 678 ATGCCGCTTGTAAAGCTCTTTCATC---GAGTATCATGACAAGACTTGAGGAAGAAGCCT 734 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 || |||||| |||||||||| ||||||||| ||| Sbjct 735 CGACTAACTCCGTGCCAGCAACCGCGGTAAGACG 768 >seq177384 Length=1815 Score = 161 bits (178), Expect = 3e-37 Identities = 190/255 (75%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 187 AACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAA 246 || |||| |||||| | | ||| |||| | || || ||||| |||||| ||| | Sbjct 1591 AAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGA 1532 Query 247 CTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAA 306 ||||||||||| || ||||| |||| |||||||||||||||| ||| ||||||||| | Sbjct 1531 CTGAGACACGGCCCGGACTCCCGCGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGA 1472 Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCTTCGGGTCGTAAAGCTCTGT 364 || || ||| || ||| |||||||| || ||||| | | | | |||||||||| | Sbjct 1471 AATCCCGATCCAACAATATCGCGTGAGTGAAGAAGGGTAATGCCGCTTGTAAAGCTCTTT 1412 Query 365 CCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGC 422 | || | | ||| ||||| || ||||| ||||||| |||||||| |||||||| Sbjct 1411 CGTCGAGTGCTCGATCATGACAAGACACGAGGAAGAAGCCCTGGCTAACTTTGTGCCAGC 1352 Query 423 AGCCGCGGTAATACG 437 || |||||||| ||| Sbjct 1351 AGTCGCGGTAAGACG 1337 >seq174726 Length=1838 Score = 147 bits (162), Expect = 6e-33 Identities = 214/300 (71%), Gaps = 3/300 (1%) Strand=Plus/Minus Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 || |||||||||| | | ||||| | ||| ||||||||| ||||||||||| ||| Sbjct 1565 GATGATCAGTAGCTGGTCCAAGAGGATAATCAACCACATTGGGACTGAGACACGACCCAG 1506 Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||| || ||||| ||| || ||||| | |||||||| || ||||| Sbjct 1505 ACTCCTACGGGAGGTAGTAGTGGATAATTTTCTGCAATGTGTGAAAGCCTGGTGGAGCAA 1446 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAAT 380 ||||| || | ||||| | | ||| |||| ||| | | | ||||| ||| Sbjct 1445 TGCCGCATGGAAGTAGAAGGACCACAAGTCATAAACTTCTTTTCCTAGAGAAGAAGCAAT 1386 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 |||||| ||| ||| |||| || | || | |||||||| |||| ||||||| | Sbjct 1385 GACGGTGTTTGGGGAATAAGCATCGACAAAGTCTATGCCAGCAACCGCAGTAATACAGAT 1326 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || || |||| || ||| | | | | |||||| || |||||||| || ||||||| Sbjct 1325 GATGCAAGTGTTACTCGAAATGA-TTGAGTGTAAAGCGTTTGTAGGTGGCTTTTTAAGTC 1267 >seq466000 Length=662 Score = 132 bits (146), Expect = 1e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||| Sbjct 662 GGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGG 603 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||| || | |||||||| ||||||||| | ||||| |||||||| Sbjct 602 GGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTG 557 >seq606760 Length=472 Score = 113 bits (124), Expect = 1e-22 Identities = 129/171 (75%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATG 381 |||||||| | ||||||| |||||| | || ||| | | | ||||| |||| Sbjct 3 GCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATG 62 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 |||||| || ||| |||| ||||||||| |||||||||||||||||||||| ||| Sbjct 63 ACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGG 122 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 || |||||||| |||||| | | |||||||||| || |||||||| || Sbjct 123 ATGCAAGCGTTATTCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTT 172 >seq543186 Length=544 Score = 104 bits (114), Expect = 7e-20 Identities = 87/104 (84%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 446 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 537 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGGGGA 479 Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| | |||||| ||| |||||||||||| |||| | ||| Sbjct 478 AGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAAGCGGT 436 >seq815756 Length=326 Score = 98.7 bits (108), Expect = 3e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||||| ||| || ||||||||||||||| | | Sbjct 326 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TT 268 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || |||||||| || ||||||| Sbjct 267 GGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 234 >seq176240 Length=1825 Score = 96.9 bits (106), Expect = 1e-17 Identities = 121/166 (73%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 157 ACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCC 216 || ||||| ||||||||||||||| | |||| ||||||| | | ||| ||||| Sbjct 43 ACTCGCGTTTGATTAGCTAGTTGG-GATGTAATAATTTACCAATTCAATGATTAGTAGTT 101 Query 217 GACCTGAGAGGGTGAT--------CGGCCACATTGGAACTGAGACACGGTCCAAACTCCT 268 | |||||||| |||| | ||||| ||| | ||||||||| | | ||||| Sbjct 102 GGTCTGAGAGGATGATCAACCACACAACCACACTGGGATTGAGACACGACCTAGACTCCC 161 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 |||| |||||||| || ||||| || |||||| ||| |||| |||| Sbjct 162 ACGGAAGGCAGCAATGAGGAATTTTCCACAATAGGCGAAAGTCTGA 207 >seq136699 Length=2220 Score = 89.7 bits (98), Expect = 2e-15 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 326 CGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATG 381 |||||||| || ||||| | | | | | |||||||||| || || || | || ||| Sbjct 2109 CGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATG 2168 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA 433 || ||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 2169 ACAAGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAA 2220 >seq688445 Length=402 Score = 87.8 bits (96), Expect = 5e-15 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| | Sbjct 101 TAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACT-G 43 Query 468 GGCGTAAAGGGTGCGTAGGTGGT 490 ||||||||||| |||||| ||| Sbjct 42 GGCGTAAAGGGCACGTAGGCGGT 20 >seq34001 Length=4774 Score = 87.8 bits (96), Expect = 5e-15 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 305 AAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGT 364 |||||| ||| | ||||| |||||||| | ||||||| |||||| | || ||| | Sbjct 4642 AAAAGC-TGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAACTTCTTT 4700 Query 365 CCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGC 422 | | ||||| |||||||||| || ||| |||| ||||||||| |||||||| Sbjct 4701 TCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGC 4760 Query 423 AGCCGCGGTAATAC 436 |||||||||||||| Sbjct 4761 AGCCGCGGTAATAC 4774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1484479376640