Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq63997 159 6e-37 seq91644 129 1e-27 seq830178 91.5 3e-16 seq759 77.0 6e-12 seq344668 73.4 7e-11 >seq63997 Length=3562 Score = 159 bits (176), Expect = 6e-37 Identities = 236/327 (72%), Gaps = 17/327 (5%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||| |||||||||| | | |||||| ||||||||| || ||||| |||| Sbjct 345 ACATGGTGAATGCCTTGGCAGTCAGAGGCGAAGAAGGACGTGCTAATCTGCGAAAAGCGT 404 Query 66 CGGGGAG-TGAGC--AAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCC 122 ||| || ||| || | || | | ||| ||| ||||||||||||||||||| Sbjct 405 CGGTAAGCTGATATGAAGCGCAAT---AACCGTCGATATCCGAATGGGGAAACCCGGTGT 461 Query 123 ---TTTGGG--TCATTGCATGCTGAAT-ACATAGGTATGCAAAGCGAACGCGGCGAACTG 176 |||| |||||| |||||| | ||| || ||||| ||| | |||||| Sbjct 462 AGTTTTGTACATCATTGTTAACTGAATTAAATAAGTTAATAAAGCAAACCAAGGGAACTG 521 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 522 AAACATCTAAGTACCTTGAGGAAAAGAAATCAACCGAGATTCCCTCAGTAGTGGCGAGCG 581 Query 237 AAATGGGATGAGCC----TTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATA 292 ||| |||| |||| ||| | | | |||| ||||| |||| | |||||| Sbjct 582 AAAAGGGAACAGCCCAGAACTACAATCAATATAAATT-ATAGTAGAATGATTTGGAAAGT 640 Query 293 GGAGCCATAGCGGGTGATAGCCCCGTA 319 ||| ||| ||||||||||||||| Sbjct 641 TCAGCGATACAAGGTGATAGCCCCGTA 667 >seq91644 Length=2906 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 358 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 299 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 298 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCAAA 246 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 245 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 189 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 188 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 129 Query 249 CCT 251 ||| Sbjct 128 CCT 126 >seq830178 Length=319 Score = 91.5 bits (100), Expect = 3e-16 Identities = 173/250 (69%), Gaps = 11/250 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 || |||||||| ||| | | |||||| ||||| ||| | ||||| |||| ||| Sbjct 23 GGCGGATGCCTAGGCAGTCAGAGGCGAAGAAGGGCGTGCAAATCTGCGAAAAGCGACGGT 82 Query 70 GAG-TGA--GCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCT--- 123 ||| ||| | || | || | ||| ||| |||||||||||||||| | | Sbjct 83 GAGCTGATAGGAAGCGTGATTAG--CCGTTGATACCCGAATGGGGAAACCCAGTGCAAGC 140 Query 124 --TTGGGTCATTGCATGCTGAATACA-TAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 ||| || | | |||||| | ||| | | | ||| || || ||| |||||| Sbjct 141 AGTTGCACTATCGTTAGATGAATAAACTAGTTTAACGAGGCGCACCGGGAGAAGTGAAAC 200 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||| | ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 201 ATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTTCCTGAGTAGCGGCGAGCGAAAG 260 Query 241 GGGATGAGCC 250 || | |||| Sbjct 261 GGAAGCAGCC 270 >seq759 Length=12707 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 2466 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 2525 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 2526 GGCGAGCGAGAGCGGAT 2542 >seq344668 Length=949 Score = 73.4 bits (80), Expect = 7e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 576 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 517 Query 229 GGCGAGCGAAATGGGATGAG 248 ||||||| | | |||| || Sbjct 516 GGCGAGCTAGAGCGGATTAG 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910353805760