Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq822004 273 7e-71 seq192335 178 4e-42 seq340544 163 9e-38 seq621983 141 3e-31 seq644394 104 8e-20 seq598502 96.9 1e-17 seq40258 95.1 4e-17 seq558986 78.8 3e-12 seq759 78.8 3e-12 >seq822004 Length=323 Score = 273 bits (302), Expect = 7e-71 Identities = 177/194 (91%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| | | Sbjct 323 CTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCTATTCATACAC 264 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 ||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||| Sbjct 263 ATCACTAATTAGCTGACGAGGCATTTGGCTATCTTAAGAGAGTCATAGTTACTCGCACCG 204 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||| Sbjct 203 TTTACCCGCACTTGGTTGAATTTCTTCACTTTAACATTCAGAGCAATGGGCAAAAATCAC 144 Query 522 ATTGCGTCAACATC 535 ||||| | | |||| Sbjct 143 ATTGCATTAGCATC 130 >seq192335 Length=1695 Score = 178 bits (196), Expect = 4e-42 Identities = 112/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1 TGACGAGACATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCTTTTACCCGTGCTT 60 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||||||||| | ||||| ||||| |||||||||||||||||||| | ||| Sbjct 61 GGTTGAATTTCTTCACTTTAATATTCAAAGCACGGGGCAGAAATCACATTGCGTTAGCAT 120 Query 535 C 535 | Sbjct 121 C 121 >seq340544 Length=962 Score = 163 bits (180), Expect = 9e-38 Identities = 109/120 (91%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||||||| |||||||||||||||| ||| ||||| | |||||||| |||||| Sbjct 472 TAATTAGATGACGAGACATTTGGCTACCTTAATAGATTCATACT-ACTCCCGCGGTTTAC 414 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 ||| |||| ||||||||| || |||||||||||||||||| ||||||||||||||||||| Sbjct 413 CCGTGCTTAGTTGAATTTATTGACTTTGACATTCAGAGCATTGGGCAGAAATCACATTGC 354 >seq621983 Length=458 Score = 141 bits (156), Expect = 3e-31 Identities = 92/101 (91%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 215 ATTAGATGGTAAGACATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGTCGTTTACCC 274 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 || |||||||||||||||| | |||||||||||| |||||| Sbjct 275 GCACTTGGTTGAATTTCTTTATTTTGACATTCAGTGCACTG 315 >seq644394 Length=438 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||| |||||| Sbjct 132 CTTTTGCTCTACGCGAGGTTTCTGTCCTCACTGAGCTGGTCTTAGGACACCTACGTTATT 191 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||||| ||||| |||||| || Sbjct 192 CTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCTGATAATGTCCTC 241 >seq598502 Length=480 Score = 96.9 bits (106), Expect = 1e-17 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 428 >seq40258 Length=4448 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 1 >seq558986 Length=524 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 |||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 472 TCAACCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTT 524 >seq759 Length=12707 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 5044 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 4985 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 4984 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 4939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1620873849280