Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq63997 284 4e-74 seq759 188 2e-45 seq586055 159 1e-36 seq130941 150 6e-34 seq18414 114 4e-23 seq15325 114 4e-23 seq320072 111 5e-22 seq378453 107 6e-21 seq17577 93.3 1e-16 seq104254 82.4 3e-13 >seq63997 Length=3562 Score = 284 bits (314), Expect = 4e-74 Identities = 400/553 (72%), Gaps = 14/553 (3%) Strand=Plus/Minus Query 14 CTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAGG 73 ||| ||||||| || ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 2693 CTCACAGTCAAACTGGCTTATGCCTTTGCACTAACCTCACGATGTCCGACCGTGATTAGC 2634 Query 74 GAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCAC 133 || ||| | | |||||||||| ||||||||| | |||||||||| ||||||||||| Sbjct 2633 CAATCTTCGTACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAGTCAAACTACCCAC 2575 Query 134 CAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTG 193 ||| ||||||| | || ||| | || | |||||||| || | || ||| Sbjct 2574 CAGACACTGTCTCTGTGCCGGATTACGGCACTAGGTTAGAATACCGCATTTTAAAGGGTG 2515 Query 194 GTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCC 253 ||||||||| | ||||| | ||||||| |||||| ||||||||||||| Sbjct 2514 GTATTTCAAGTTTGGCTCCATTAAAACTAGCGCTTTAATTTCATAGCCTCCCACCTATCC 2455 Query 254 TACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTT 310 |||||| || | | |||| | | | ||||||||||| ||||| | |||||||||| Sbjct 2454 TACACATTAAAATC-CAGAATTC-AGTGTCAAGCTATAGTAAAGGTTCACGGGGTCTTTC 2397 Query 311 CGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTT 370 |||| ||||||| | | ||||||| || | | ||||||||| | | | ||| Sbjct 2396 CGTCTTGCCGCGGGTATACTGCATCTTCACAGCAAATTCAATTTCACTGAGTCCCAGGTG 2337 Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 2336 GAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 2277 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490 |||||||||||||| ||||||||||| ||||||||||| ||||||||| | || Sbjct 2276 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAGTCTAGAGCT 2217 Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 | | | | | | | || ||| |||||||||| ||||||||||||||||| Sbjct 2216 TTA-AGTTTCCTTTGACT-CTTTCGA------TTAACCTTCCGGCACCGGGCAGGCGTCA 2165 Query 551 GTCCGTATACCTC 563 |||||||| || Sbjct 2164 CACCGTATACTTC 2152 >seq759 Length=12707 Score = 188 bits (208), Expect = 2e-45 Identities = 293/415 (71%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 5332 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 5274 Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || | |||||| |||| | || Sbjct 5273 CGCAGTGTCCCGCCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 5214 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 5213 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 5169 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 5168 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAGGTGCACGGGGTCTT 5109 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 5108 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 5049 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 5048 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 4989 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| Sbjct 4988 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 4934 >seq586055 Length=493 Score = 159 bits (176), Expect = 1e-36 Identities = 182/243 (75%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||||||||||||| | | | || || | | ||| |||||| ||||| | | Sbjct 442 TCCCACCTATCCTACATATTCGATCAAGGTTGTCACTGCGAAGGTATAGTAAAGGTGCAC 383 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 ||||||| |||| |||| | | ||||||| || | | |||||||| ||| Sbjct 382 AGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCATCGG 323 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | | || |||||| | ||| ||||||||| ||| |||||||||||| ||||| || Sbjct 322 GTCCATGTCGGAGACAACGGGGCAGTCGTTACACCACTCGTGCAGGTCGCTACTTATGCG 263 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| Sbjct 262 ACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCC 203 Query 481 ATT 483 ||| Sbjct 202 ATT 200 >seq130941 Length=2291 Score = 150 bits (166), Expect = 6e-34 Identities = 113/133 (85%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||||||| | || |||||||| ||| ||||||||| |||||||||||||||| Sbjct 1 ATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGC 60 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 ||||| |||||||||||||| ||||||||||| |||| | ||||||||||||||||| Sbjct 61 TACTTATGCGACAAGGAATTTCACTACCTTAGGACAGTTAGAATTACCACCGCCGTTTAC 120 Query 471 TGGGGCTTCAATT 483 |||||||| ||| Sbjct 121 CGGGGCTTCCATT 133 >seq18414 Length=5984 Score = 114 bits (126), Expect = 4e-23 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||||| | | || |||||||| ||| ||||||||| ||||| ||| || | Sbjct 1589 CAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTTGTGTTGG-C 1531 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | ||||| |||||||||||||||||||||||||| |||| |||||| || | |||| Sbjct 1530 GCTACTTATGTGACAAGGAATTTCGCTACCTTAGGATAGTTAGAGTTACTGCCACTGTTT 1471 Query 469 ACTGGGGCTTCAATT 483 | |||||||| ||| Sbjct 1470 ATCGGGGCTTCCATT 1456 >seq15325 Length=6360 Score = 114 bits (126), Expect = 4e-23 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||| ||| |||| |||| ||||||||||||||||||||||||| | Sbjct 2587 TCGTTACGCCTTTCGTATGGGTTGGAAATTACACGACAAGGAATTTCGCTACCTTAGGTT 2528 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||| | ||||||||||| | | | ||| | || || Sbjct 2527 CGTTATAGTTACGACCGCCTTGCACTGGGGCTTCGGTCA-TTGGCTCCCCTGTCATGTCA 2469 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||||||||||||| || |||||||| | || || |||| Sbjct 2468 TCAGGTCACCAACTTTCTTAACCTTCCAACATTGGGCAGGCATTAGCCCCCATAC 2414 >seq320072 Length=1029 Score = 111 bits (122), Expect = 5e-22 Identities = 108/137 (79%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCC--TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGG 406 |||||||| |||| | ||| | ||||||| |||| ||||||||| |||||| |||||| Sbjct 600 CAATTTCATCGGGTCAATGTCGG-GAGACAGAAGGGAAGTCGTTACACCATTCATGCAGG 658 Query 407 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 || ||||| | ||||| |||| ||||||||||||| |||||||||| |||||| Sbjct 659 CCGCTACTTATGCAACAAGAAATTACGCTACCTTAGGACAATTATAGTTACTGTCGCCGT 718 Query 467 TTACTGGGGCTTCAATT 483 | |||| ||||| ||| Sbjct 719 TAACTGATGCTTCCATT 735 >seq378453 Length=853 Score = 107 bits (118), Expect = 6e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||||| ||||||| |||||||| ||||||||||| |||||| |||||| ||||| Sbjct 655 TCATTACGCCTTTCGTGCGGGTCGGAAGTTACCCGACAAAGAATTTTGCTACCGTAGGAC 714 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||||| || || |||||||| Sbjct 715 TGTTATAGTTACGGCCGCCATTCACCGGGGCTTC 748 >seq17577 Length=6077 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||||| |||||| | || |||||||||| ||||| | || Sbjct 3702 ATTTCACCGAGCCTGTCTCCAAGACAGT-GCTTAGATCGTTACGCCTTTCGTACTATTCA 3644 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||| |||||||||||| |||||||||||| |||||||||| ||| | || | Sbjct 3643 GAACTTACCTGACAAGGAATTTTTCTACCTTAGGATCATTATAGTTACATCCGTCATTCA 3584 Query 470 CTGGGGCTTC 479 | ||||||| Sbjct 3583 CCTGGGCTTC 3574 >seq104254 Length=2677 Score = 82.4 bits (90), Expect = 3e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||| ||||||||||| ||||||||| || |||||||| Sbjct 2677 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCGTTCACCGGGGCTTC 2620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1687485103360