Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq603567 425 2e-116 seq293551 322 1e-85 seq87208 217 4e-54 seq86396 167 7e-39 seq44589 134 4e-29 seq180229 93.3 1e-16 seq202901 89.7 2e-15 >seq603567 Length=475 Score = 425 bits (470), Expect = 2e-116 Identities = 382/473 (81%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| || | | |||||| || |||| | ||||||| || ||||| Sbjct 471 GTACTCATTCCAATTACCAGGCTCGAAAGAGTCCAGTATTGTTGTTTATTGACAATACCT 412 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 411 CCCCATGTGAGGATTGGGTAATTTGCGCGCGTGCTGCCTTCCTTGGATGTGGTAGCCGTT 352 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||| ||| ||||||||||||||||||||| | |||||| ||||| ||| Sbjct 351 TCTCAGGCTCCCACTCTGGAATCGAACCCTAATTCCCCATCACCCGTCACCACCATAGTA 292 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||| ||| |||||||||| ||||||||||| ||||| | | | |||| Sbjct 291 GGCCACTATCCTACGATCAAAAGTTGATATGGCAGAAATTTTAATGATGCGTAGACGGCA 232 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAAT-----CACCAAGGAGCCCCGAAGGGC 294 | | || | || ||| || | |||||| |||||| || ||| | || | | || Sbjct 231 CGAGGGTCGTGTGATCCGCTGAGTTATCATGAATCATCGCAGCAACGGGCAGAGCA-TGC 173 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 || | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 172 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACATATTA 113 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||| ||||||||| ||| ||||||| |||| || ||| |||||| ||| ||||||||| Sbjct 112 GCTATAGAATTACAACGATTATCCAAGTAG-CAGATACCATCAAACAAAGTATAACTGAT 54 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGC 465 ||||||| |||||| |||||||| || | | ||| | ||||||| |||||| Sbjct 53 ATAATGAGACATTCGTAGTTTCACAGTCTGAAGTTGTTCATACTTACACATGC 1 >seq293551 Length=1128 Score = 322 bits (356), Expect = 1e-85 Identities = 325/414 (79%), Gaps = 19/414 (5%) Strand=Plus/Plus Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTT 60 Query 169 GATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 |||||||||||| | ||||||||||| |||||||| |||||| ||||||| || Sbjct 61 ACAACCATGGTAGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGAT 120 Query 229 CCATCGCCGGCTC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACC-AAGGAGC 284 | |||||||| | |||||| |||||| | |||||||| || ||||| ||| || Sbjct 121 GCGTCGCCGGCACGAAGGCCGTGCGATCAGCCCAAAGTTATTCAGAGTCACCAAAGTAGA 180 Query 285 C-----CCGAA--GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG----AAGTC 333 | ||||| || | | |||| |||||||||| | |||||||| ||| Sbjct 181 CGATGGCCGAAACCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCGTCTCCGGTC 240 Query 334 GGG--GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGGTA 390 ||| | || |||||||||||||| || ||| || | ||||||||||| | | | ||| Sbjct 241 GGGACTCTGTTGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCATGTAACTGAAGTA 300 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 | ||| | | ||| ||||||||| ||||||||| | ||| ||||||| || | | ||| Sbjct 301 CGATCTATTGAACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTA-ATGTGGCT 359 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 360 TGCACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGATAACTGGCAG 413 >seq87208 Length=2995 Score = 217 bits (240), Expect = 4e-54 Identities = 359/503 (71%), Gaps = 30/503 (6%) Strand=Plus/Plus Query 19 AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGG 78 |||| ||| |||||| ||| ||||||||||||| || ||| |||| ||||||| Sbjct 424 AGACTCAATTGAGCCCA-TATTGTTATTTATTGTCACAAC-TCCTTGTGTTAGGATTGGA 481 Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||||| | |||| ||||| ||||||||||||| |||||| || | || |||| | Sbjct 482 TAATTTGCATGTATGCTTCCTTCGTTGGATGTGGTAGTTGTTTCTTAGTCCCCATCTCTG 541 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATAC---CATGGTAGGCCACTATCCTACC 195 || ||||||||||||| || ||| ||| || ||| |||| ||| |||||| || Sbjct 542 GATTCGAACCCTAATTATTTGTCACC--TTGTCACCAACATAGTAGACCATTATCCTCCC 599 Query 196 ATCGAAAGTTGATAGG-GCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGA 253 |||||||||||||||| | |||| ||| ||| |||| | | ||| || | | | Sbjct 600 ATCGAAAGTTGATAGGATAAAAAATATGATTGATGTGTCGCTGACACAATGGTCGAGACA 659 Query 254 TTCGTTAAGTTATTATGAATCACCA-------AGG-AGCCCCGAAGGGCGTTGGTTTTTT 305 | | || |||||| ||| |||| || ||| || || | ||| |||| Sbjct 660 TCCTTTGAGTTATCATGGATCATCACAAGAATAGGCAGATCCCA----CGTCAAACTTTT 715 Query 306 ATCTAATAAATACACCCCTT-CCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||||| | ||| ||| || ||| | ||||||||||| | ||||| Sbjct 716 ATCTAATAAATGTATTTCTTATAGAATTCATGGTCCGTTAAATGTATTAGCTTTCGAATT 775 Query 365 ACCACGGTTATCC-ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCC 423 |||| | |||||| | ||||| | || |||||||||| ||||||||||||||||||| Sbjct 776 ACCAAGATTATCCGAGGTAGT-GGATATCATCAAATAAATCATAACTGATTTAATGAGCC 834 Query 424 ATTCGCAGTTTCACTGTATAGA--TTGCTTATACTTAGACATGCATGGCTT---AATCTT 478 |||||||||||| || | || ||| | |||||| ||||| | | ||| ||| Sbjct 835 ATTCGCAGTTTC-GTGGCTTGAATTTGTTCGTACTTACACATGAAAGACTTCCATATCCA 893 Query 479 TGAGACAAGCATATGACTACTGG 501 |||| || ||||||||||| || Sbjct 894 AGAGATAAACATATGACTACCGG 916 >seq86396 Length=3012 Score = 167 bits (184), Expect = 7e-39 Identities = 116/132 (88%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| | || |||||| |||| |||||||||| ||||||| Sbjct 2881 GTACTCATTCCAATTACCAGATTCGAATGAGCCCGGTATTGTTATTTATTGTAACTACCT 2940 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||| | ||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 2941 CCCCGTTTTAGGATTGGTTAATTTGCACGCCTGCTACCTTCCTTGGATGTGGTAGCCGTT 3000 Query 121 TCTCAGGCTCCC 132 |||||||||||| Sbjct 3001 TCTCAGGCTCCC 3012 >seq44589 Length=4249 Score = 134 bits (148), Expect = 4e-29 Identities = 114/139 (82%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||||||||||||||| || ||||||| | | |||||| | ||| |||||||||||||| Sbjct 2245 TTTTATCTAATAAATGCATCCCTTCCAGAAACCGGGTTTGTTGCACGTATTAGCTCTAGA 2304 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | ||||| | |||| || ||| |||||| |||| |||||||||||||||| Sbjct 2305 ATTACTATGGTTACCTGAGTAG-CAGATACCATCAAACAAACTATAACTGATTTAATGAC 2363 Query 422 CCATTCGCAGTTTCACTGT 440 |||||| ||||||||| || Sbjct 2364 CCATTCACAGTTTCACAGT 2382 >seq180229 Length=1792 Score = 93.3 bits (102), Expect = 1e-16 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 |||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| Sbjct 1011 TGCTGCCTTCCTTGGATGTGGTAGTTGTTTCTTAGGCTCCCTCTCTGGTATCGAACCCTA 952 Query 152 ATTC 155 |||| Sbjct 951 ATTC 948 >seq202901 Length=1616 Score = 89.7 bits (98), Expect = 2e-15 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA 188 ||| | ||| |||| |||||||||| || |||| | ||| | ||| | ||||| Sbjct 671 TCCATGTCCATAATCAAACCCTAATTTCCACC-ACCCATCACAACCTTAGTAAGACACTA 729 Query 189 TCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG-GCC 247 | ||||||||||||||||||| || ||||||||||||| | | |||| | || || Sbjct 730 TTCTACCATCGAAAGTTGATAAGGTGGAAATTTGAATGATGTGTAGTCGGCACGAGACCC 789 Query 248 ATGCGATTCGTTAAGTTATTATGAAT 273 ||||||| | || |||||| |||||| Sbjct 790 ATGCGATCCATTGAGTTATAATGAAT 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497167234560