Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq48246 183 2e-41 seq107321 149 5e-31 seq6274 98.7 8e-16 >seq48246 Length=4099 Score = 183 bits (202), Expect = 2e-41 Identities = 412/604 (68%), Gaps = 30/604 (5%) Strand=Plus/Minus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || |||| | |||||| |||||||| || || | Sbjct 2161 TCGCTTCTGTAT-GTTCCCAATTCAGTACCCTCAAATTTGGGAAATGTACAAGAAAGCCG 2103 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG--ACTGGGA 61169 ||||||| || ||||| | || |||||||||||||| |||| | || | ||||||| Sbjct 2102 AAGCTTCGTTTTGGACAGCCGAAGAGGTCGATTTGTCTGAAGA--TCAACGTCACTGGGA 2045 Query 61170 G-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 |||| | || ||| || || || || | || || | || ||||| ||||| | Sbjct 2044 CTCGTTGACAGA-CGGCGAGAGGCACTTTATCACTCACGTCCTTGCCTTCTTCGCCGCCT 1986 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 | || || ||||| || || || | ||| ||| | | ||||| ||||| ||| Sbjct 1985 CCGATGGCATCGTTTTGGAAAACCTAGCCGGACGATTCATGAAAGAGGTTCAAGTTGCGG 1926 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 |||||||| |||||||| |||||||||||||| |||||| ||||||| |||||||||| Sbjct 1925 AGGCGCGTGCCTTCTACGGATTCCAGATTGCCATCGAGAATATCCACTCCGAGATGTACA 1866 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA----CGATTGTTCAAT 61404 || | || | || | ||||| | ||| || | ||| || | ||| Sbjct 1865 GTTTGCTTCTGGAATCCTACATAAAGGA----CTCTAATGAGAAAAGCAGACTCTTCCGA 1810 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || |||||||| || ||| || || ||||||| ||||||| |||| ||||| | Sbjct 1809 GCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGAT---C 1753 Query 61465 AGTACAACGGCTACATTTGGTGAACG----ATTGCTGGCATTTGCGGTGGTCGAGGG-TG 61519 | ||| || |||| || || || ||| | ||||| || |||| | Sbjct 1752 GATGGCTCGGAGACGTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTG---AAGGGATT 1696 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | ||||| | | | | | || ||| || |||||||||||||||||||| | ||||| | Sbjct 1695 TTCTTTTCCG-GAAGCTTCTG-CGCGATTTTTTGGTTGAAGAAACGTGGGTTGATGCCTG 1638 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-T 61638 | | |||||| || || || || || || || ||||| | || ||||||||||| | Sbjct 1637 GATTAACCTTCTCGAACGAATTAATCTCGCGAGATGAGGGATTACACTGTGATTTTGCGT 1578 Query 61639 GTTT 61642 |||| Sbjct 1577 GTTT 1574 >seq107321 Length=2628 Score = 149 bits (164), Expect = 5e-31 Identities = 552/844 (65%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| || ||||||| ||||||||| |||||||| | ||| Sbjct 753 ATGTACAAAAAAGCAGAAGCTTCATTTTGGACGGCGGAGGAGGTTGATTTGTCACAGGAC 812 Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | | ||||| || ||| || || | ||||| | || || | || Sbjct 813 CAGCGTCAGTGGGACAACCTAAGCGAT-GGCGAGAGGTACTTCATCACTCACGTCCTCGC 871 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || || || ||||| || || | | ||| ||| | | || Sbjct 872 ATTCTTCGCCGCCTCCGATGGAATCGTATTGGAAAACCTCGCCGGACGGTTCATGAAAGA 931 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| ||||| ||||||||||| |||||||| |||||||| || || ||||| |||| Sbjct 932 GGTCCAAGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATCGCAATCGAGAACATCCA 991 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||| |||||||||||| | || |||| | ||||||| || | || | | | | Sbjct 992 CTCCGAGATGTACAGTCTGCTTCTCGAATCATACATCAAAGACTCCAACGAGAAGAGTA- 1050 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | |||| || ||||| || || || | || |||||| | |||||| ||| Sbjct 1051 GGCTGTTTCGCGCAATCGATACCATCCCTTGCATCCAGAAGAAAGCTAAATGGGCCCTCA 1110 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | | | | || || | ||||| | | || || || |||| Sbjct 1111 GATGGAT---CGATGGATCTGAAACCTTCGCAGAACGGATCATCGCTTTCGCTTGCGTCG 1167 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | ||| | || ||| || || ||| || || ||| | || ||||| || |||| Sbjct 1168 AAGGTATCTTCTTCTCCGGCAGTTTCTGCGCCATATTCTGGCTCAAAAAACGAGGGCTTA 1227 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || || ||| || || ||||| || || |||||||| |||| ||||| | Sbjct 1228 TGCCAGGGCTAACATTCTCGAACGAATTGATCTCGCGAGACGAGGGTTTGCACTGTGACT 1287 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || ||||| | || | | | |||| | | || || ||||| ||| | Sbjct 1288 TCGCGTGCTTGCTTTACAGCCTGTTGAAGATGAAGC-TGAGT--GAAGAGCGAGTGAAGG 1344 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 || || ||| || ||| || || |||||| |||| ||| || ||| |||| Sbjct 1345 CAATCGTGGCTGATGCTGTAGAGATTGAGAGGGAATTCGTCTG--TGAAGCATTG-CCGT 1401 Query 61752 CT-CACTCATCGGCATGAATTGTGGACTAATGTCGCA-GTATATTGAATTTGTTGCCGAC 61809 | | | || ||||| | || ||| ||| ||||| || ||||| || || Sbjct 1402 GTGGGTTGGTGGGGATGAACGCCGATCTTATG-AGCACATATATCGAGTTTGTAGCAGAT 1460 Query 61810 CGTCTG-TTGGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 || || ||||| | |||||| || | | ||| || ||| | ||||||||||||| Sbjct 1461 CGATTGATTGGT-GCTTTGGGATACG-GGAAGATGTACAATGTTCAGAACCCATTTGATT 1518 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| ||||||| || | || ||||| ||||| |||||||| | || ||||| | Sbjct 1519 GGATGGAACTGATTTCATTGCAGGGTAAGACCAATTTCTTCGAGAAGAGGGTCGGCGAAT 1578 Query 61928 ATCA 61931 | || Sbjct 1579 ACCA 1582 >seq6274 Length=8207 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 || || ||||| | ||| || || ||||||||||| || |||||||||||||||| || Sbjct 4808 CCATGGTTTTTCCTCAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAA 4867 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 | || || | ||| | | ||| || || |||||||| || || ||||| | || Sbjct 4868 ACAGCAAATGCACCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTA 4927 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||||||||||| || | | || |||||| | ||||| ||||| Sbjct 4928 AACACACGCAACATTGGAATAATACCATTAGATGTTCCATTTGTGCC 4974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393322931650400