Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04]
876,110 sequences; 1,133,657,130 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq48246 183 2e-41
seq107321 149 5e-31
seq6274 98.7 8e-16
>seq48246
Length=4099
Score = 183 bits (202), Expect = 2e-41
Identities = 412/604 (68%), Gaps = 30/604 (5%)
Strand=Plus/Minus
Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111
||| ||| |||| |||||| || |||| | |||||| |||||||| || || |
Sbjct 2161 TCGCTTCTGTAT-GTTCCCAATTCAGTACCCTCAAATTTGGGAAATGTACAAGAAAGCCG 2103
Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG--ACTGGGA 61169
||||||| || ||||| | || |||||||||||||| |||| | || | |||||||
Sbjct 2102 AAGCTTCGTTTTGGACAGCCGAAGAGGTCGATTTGTCTGAAGA--TCAACGTCACTGGGA 2045
Query 61170 G-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228
|||| | || ||| || || || || | || || | || ||||| ||||| |
Sbjct 2044 CTCGTTGACAGA-CGGCGAGAGGCACTTTATCACTCACGTCCTTGCCTTCTTCGCCGCCT 1986
Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288
| || || ||||| || || || | ||| ||| | | ||||| ||||| |||
Sbjct 1985 CCGATGGCATCGTTTTGGAAAACCTAGCCGGACGATTCATGAAAGAGGTTCAAGTTGCGG 1926
Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348
|||||||| |||||||| |||||||||||||| |||||| ||||||| ||||||||||
Sbjct 1925 AGGCGCGTGCCTTCTACGGATTCCAGATTGCCATCGAGAATATCCACTCCGAGATGTACA 1866
Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA----CGATTGTTCAAT 61404
|| | || | || | ||||| | ||| || | ||| || | |||
Sbjct 1865 GTTTGCTTCTGGAATCCTACATAAAGGA----CTCTAATGAGAAAAGCAGACTCTTCCGA 1810
Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464
|| |||||||| || ||| || || ||||||| ||||||| |||| ||||| |
Sbjct 1809 GCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGAT---C 1753
Query 61465 AGTACAACGGCTACATTTGGTGAACG----ATTGCTGGCATTTGCGGTGGTCGAGGG-TG 61519
| ||| || |||| || || || ||| | ||||| || |||| |
Sbjct 1752 GATGGCTCGGAGACGTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTG---AAGGGATT 1696
Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579
| ||||| | | | | | || ||| || |||||||||||||||||||| | ||||| |
Sbjct 1695 TTCTTTTCCG-GAAGCTTCTG-CGCGATTTTTTGGTTGAAGAAACGTGGGTTGATGCCTG 1638
Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-T 61638
| | |||||| || || || || || || || ||||| | || ||||||||||| |
Sbjct 1637 GATTAACCTTCTCGAACGAATTAATCTCGCGAGATGAGGGATTACACTGTGATTTTGCGT 1578
Query 61639 GTTT 61642
||||
Sbjct 1577 GTTT 1574
>seq107321
Length=2628
Score = 149 bits (164), Expect = 5e-31
Identities = 552/844 (65%), Gaps = 22/844 (3%)
Strand=Plus/Plus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
||||||||||| || |||||||| || ||||||| ||||||||| |||||||| | |||
Sbjct 753 ATGTACAAAAAAGCAGAAGCTTCATTTTGGACGGCGGAGGAGGTTGATTTGTCACAGGAC 812
Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214
| | | ||||| || ||| || || | ||||| | || || | ||
Sbjct 813 CAGCGTCAGTGGGACAACCTAAGCGAT-GGCGAGAGGTACTTCATCACTCACGTCCTCGC 871
Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274
||||| ||||| || || || ||||| || || | | ||| ||| | | ||
Sbjct 872 ATTCTTCGCCGCCTCCGATGGAATCGTATTGGAAAACCTCGCCGGACGGTTCATGAAAGA 931
Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334
||| ||||| ||||||||||| |||||||| |||||||| || || ||||| ||||
Sbjct 932 GGTCCAAGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATCGCAATCGAGAACATCCA 991
Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393
||| |||||||||||| | || |||| | ||||||| || | || | | | |
Sbjct 992 CTCCGAGATGTACAGTCTGCTTCTCGAATCATACATCAAAGACTCCAACGAGAAGAGTA- 1050
Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453
| |||| || ||||| || || || | || |||||| | |||||| |||
Sbjct 1051 GGCTGTTTCGCGCAATCGATACCATCCCTTGCATCCAGAAGAAAGCTAAATGGGCCCTCA 1110
Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513
||||| | | | | | || || | ||||| | | || || || ||||
Sbjct 1111 GATGGAT---CGATGGATCTGAAACCTTCGCAGAACGGATCATCGCTTTCGCTTGCGTCG 1167
Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573
| ||| | || ||| || || ||| || || ||| | || ||||| || ||||
Sbjct 1168 AAGGTATCTTCTTCTCCGGCAGTTTCTGCGCCATATTCTGGCTCAAAAAACGAGGGCTTA 1227
Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633
|||| || || || ||| || || ||||| || || |||||||| |||| ||||| |
Sbjct 1228 TGCCAGGGCTAACATTCTCGAACGAATTGATCTCGCGAGACGAGGGTTTGCACTGTGACT 1287
Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693
| || ||||| | || | | | |||| | | || || ||||| ||| |
Sbjct 1288 TCGCGTGCTTGCTTTACAGCCTGTTGAAGATGAAGC-TGAGT--GAAGAGCGAGTGAAGG 1344
Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751
|| || ||| || ||| || || |||||| |||| ||| || ||| ||||
Sbjct 1345 CAATCGTGGCTGATGCTGTAGAGATTGAGAGGGAATTCGTCTG--TGAAGCATTG-CCGT 1401
Query 61752 CT-CACTCATCGGCATGAATTGTGGACTAATGTCGCA-GTATATTGAATTTGTTGCCGAC 61809
| | | || ||||| | || ||| ||| ||||| || ||||| || ||
Sbjct 1402 GTGGGTTGGTGGGGATGAACGCCGATCTTATG-AGCACATATATCGAGTTTGTAGCAGAT 1460
Query 61810 CGTCTG-TTGGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867
|| || ||||| | |||||| || | | ||| || ||| | |||||||||||||
Sbjct 1461 CGATTGATTGGT-GCTTTGGGATACG-GGAAGATGTACAATGTTCAGAACCCATTTGATT 1518
Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927
||||| ||||||| || | || ||||| ||||| |||||||| | || ||||| |
Sbjct 1519 GGATGGAACTGATTTCATTGCAGGGTAAGACCAATTTCTTCGAGAAGAGGGTCGGCGAAT 1578
Query 61928 ATCA 61931
| ||
Sbjct 1579 ACCA 1582
>seq6274
Length=8207
Score = 98.7 bits (108), Expect = 8e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460
|| || ||||| | ||| || || ||||||||||| || |||||||||||||||| ||
Sbjct 4808 CCATGGTTTTTCCTCAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAA 4867
Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520
| || || | ||| | | ||| || || |||||||| || || ||||| | ||
Sbjct 4868 ACAGCAAATGCACCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTA 4927
Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567
|| ||||||||||| || | | || |||||| | ||||| |||||
Sbjct 4928 AACACACGCAACATTGGAATAATACCATTAGATGTTCCATTTGTGCC 4974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393322931650400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |