Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq227744 154 4e-33 seq342690 132 1e-26 >seq227744 Length=1455 Score = 154 bits (170), Expect = 4e-33 Identities = 240/340 (71%), Gaps = 5/340 (1%) Strand=Plus/Minus Query 33588 CATTTGCATCACACCACCCATTTGCTGGATAACAATTTCTGTGGTGTATTTTTCAACTCC 33647 ||||||||| |||||| || | | || ||||||||| ||||| ||||| ||| Sbjct 443 CATTTGCATTGTACCACCAATATTT---ACAATAATTTCTGTAGTGTAACGTTCAAGTCC 387 Query 33648 AGCATTATCAGTCCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTT 33707 | | ||| |||||||||||| | ||| ||||||| ||| ||||| || ||||| Sbjct 386 ATTTTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTGAGAACCTTT 327 Query 33708 CCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTC 33767 | |||||| || ||||||||||| || | || ||||| | ||||| || |||||||| Sbjct 326 TCGAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCATTC 267 Query 33768 AGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGA 33827 |||| || || || || ||||| ||||| ||||| ||| || ||||| | | Sbjct 266 TGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAATGT 207 Query 33828 TACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGT 33887 | || | || || ||||||||||| || || ||||| || || || ||||| | Sbjct 206 CATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTAA-AT 148 Query 33888 GCCGAGGATG-ATTACTTTATTTACGCCGCGAGTTGCCAT 33926 ||| | | | || ||||||||||| || | | | ||||| Sbjct 147 GCCCAATAAGAATAACTTTATTTACACCTCTACTGGCCAT 108 >seq342690 Length=956 Score = 132 bits (146), Expect = 1e-26 Identities = 219/311 (70%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 33618 AACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAA 33677 |||||||||||| || || ||| | ||| | || |||||||||||| | | Sbjct 618 AACAATTTCTGTAGTATAACGTTCTAAACCATTTTGGTCTTGCCATTTTCTAGTTTG-TA 676 Query 33678 CTGA-CCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGA 33736 ||| ||||||| ||| ||||| || ||||| | |||||| ||||| |||||||| || | Sbjct 677 GTGATCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCACCGGCAATTTCTGCTA 736 Query 33737 GCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCT 33796 || ||||| | |||| | |||||||| |||| || || || || |||||| | Sbjct 737 ATTTTCCAAATAATACTATTCTATGCCATTCTGTTTTTTCTTTATTTTCTCCAGTATTTT 796 Query 33797 TATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCA 33856 |||| ||||| ||| || || || | || | || | || || ||||| |||| Sbjct 797 TATCTTTCCAATTTTCTGAAGTTGCTAAAGTCATATTTACTACTGCATTACCATTGGGCA 856 Query 33857 TGTATCGCACTTCTGGGTCCTGGCCT-AATGTGCCGAGGATGATTACTTTATTTACGCCG 33915 | || || |||||||| || || ||| ||||| || | | || |||||||| ||||| Sbjct 857 TATAACGTACTTCTGGATCTTGTCCTAAATGT-CCAATAAGAATAACTTTATTAACGCCT 915 Query 33916 CGAGTTGCCAT 33926 | | ||||||| Sbjct 916 CTACTTGCCAT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143464531077280