Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_033276.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 618 8e-174 >seq9745 Length=7305 Score = 618 bits (684), Expect = 8e-174 Identities = 725/976 (74%), Gaps = 12/976 (1%) Strand=Plus/Minus Query 1597 CGAAGATCGCATTTTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCGTCCAGAT 1656 |||||| |||||| | | |||||| || | || | ||||| || ||||| ||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1657 ACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1716 |||||||||| || || ||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1717 TAATATGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1776 ||| | || |||||||||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1777 ATTCTTTGAAGTGTTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCT 1836 |||| || || ||||||| |||| ||||||| |||| ||||||||||||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1837 CATTACTGTAGACCTTTGGACTAAGGTCTAAGTGACCACACAAATAATTATGTGGACCCA 1896 |||| |||| ||||| || | || | ||||| || || ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1897 GTGACCTAGCCCACATTGTCTTCCCCGTACGACTATCACCTTCTATCACTATACTTATGG 1956 ||| |||||||| ||||| ||||| || | | |||||||||| |||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1957 GTCTCAATGGCCGCGCAGCGGAACCCACCACGTTCTCAGCAGCCCATTCTTCAAGTTCAT 2016 ||| |||| | ||| || || ||| ||||| || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2017 CCGGAACTTGATCAAAAGACGAAGAAGAAAAAGGAGAGACATAAACCTCCATTGGAGGTG 2076 |||| || | | ||| | || ||||||||| ||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2077 TAAAAATCCTATCTAAATTCGCATTTAAATTATGAAATTGTAATACATAATCCTTGGGAG 2136 || ||| |||| ||||| |||||||| ||||||| |||| |||||| || || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2137 CTAACTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGTGTTAAGCGCTGCGGCG 2195 | ||| |||| | ||||||| || ||| ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2196 TAAGCGTCGTTGGCTGTCTGTTGCCCCCCTC------TTGCAGATCTTCCATCGATCTGA 2249 ||| | || || || | ||||| ||||||| |||||||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2250 AACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTT 2309 || |||||||| || | || ||||||| |||||| | ||| ||||| |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2310 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCG 2369 |||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||| || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2370 AAGAATCGCTGATTCTTGCACTGGTATTTCCCCTCGAACTGGATGAGCACGTGTAGATGA 2429 ||||||| | |||| |||| ||| ||||| ||||| ||||| |||||||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2430 GGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGATATATTTTTTGGAAGTTGGGGTT 2489 ||||||| || || ||| |||||||| |||||||| ||||| ||| |||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2490 TGTAGGTTT--ATTAATTGTGAAAGTGCTTCTTCTTTCGTTAAAGAGCACTTGGGATATG 2547 | ||||||| | |||| ||| || ||||| ||||| || | |||||| | |||||||| Sbjct 5957 TTTAGGTTTTGAATAAT--TGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2548 TGAGGAAATAATTTTT 2563 | || ||| |||||| Sbjct 5899 TTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160