Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 181 8e-41
seq299969 109 4e-19
seq230622 107 2e-18
seq218924 87.8 1e-12
>seq273947
Length=700
Score = 181 bits (200), Expect = 8e-41
Identities = 413/611 (68%), Gaps = 24/611 (4%)
Strand=Plus/Plus
Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390
||||||| |||||||||||| |||| |||| || || |||| || |||| |
Sbjct 3 TCCACTCTGAGATGTACAGTCTTCTTCTCGAAACTTATATCAAAGATTCA----AACGAG 58
Query 61391 AA----CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGG 61446
|| ||||| || ||| ||||||||| | || || ||| ||| || ||||||
Sbjct 59 AAGAGTCGATTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGG 118
Query 61447 GCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506
|| || || |||||| ||| || || | |||| || || | ||||||||||
Sbjct 119 GCGTTAAAGTGGATCGACAGCAC---GGAATCGTTTGCCGAGCGTATTTTGGCATTTGCT 175
Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565
|| || || | || ||| || | | | ||| || | || |||||||| |||||
Sbjct 176 TGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATT-TTCTGGTTGAAAAAACG 234
Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625
|||| | ||||| || || || ||| ||||||||||| ||||| |||||||| | ||
Sbjct 235 TGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCA 294
Query 61626 TTGTGATTTTGC-TGTTT-TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683
||| |||||||| ||||| | |||||| | || ||| | | ||| |
Sbjct 295 TTGCGATTTTGCTTGTTTGTTGTATTCA-----TTGTTGAGGAAGAAACTGAGTGAGAAT 349
Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743
|| ||| |||||||||| || || ||| ||| || |||||| || ||| ||
Sbjct 350 CGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCC 409
Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803
||||| || | || | || |||||| | | | ||| || || |||||||||||
Sbjct 410 TTGCCTGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTG 469
Query 61804 GCCGACCG-TCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCAT 61861
||||| | | ||||| || ||||||| || ||||||||| |||| ||||
Sbjct 470 GCCGATAGATTGGTTGGAGCTTTAGGGTATG--GCAAAATCTATAATGTTCAAAATCCAT 527
Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921
|||||| ||||| ||||||| || | || ||||| ||||| || || ||| | || |
Sbjct 528 TTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTG 587
Query 61922 GCGACTATCAA 61932
| || ||||||
Sbjct 588 GGGAATATCAA 598
>seq299969
Length=1347
Score = 109 bits (120), Expect = 4e-19
Identities = 198/290 (68%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| || ||||| | || ||| |||||||| || || ||||| |||||||
Sbjct 290 TGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 231
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183
|||| | ||||| |||||| | || | ||| | | ||||| ||| | ||
Sbjct 230 GGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGCCATTGGGAATCCTTAACTTCCG 171
Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243
|| |||| ||||| | || || | || ||||| || ||||| || || |||||
Sbjct 170 ACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTTT 111
Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303
|||||| | | ||| ||| | | || || |||||| | || || | ||||
Sbjct 110 TGGAGAATCTCGCCGGACGCTTCATGAAAGAAGTTCAAGTGGCTGAAGCCAGAGCCTTCT 51
Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTT 61353
| || ||||| ||||| || |||||| ||||||| |||||||||||| ||
Sbjct 50 ATGGATTCCAAATTGCGATCGAGAATATCCACTCTGAGATGTACAGTCTT 1
>seq230622
Length=445
Score = 107 bits (118), Expect = 2e-18
Identities = 186/268 (69%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|||||| |||||||| ||||| ||||||||||||||||| | ||||| |||||| |
Sbjct 267 ATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAGGAAGTCGATCTC 208
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206
|| | || | | |||||| ||| | || || | || ||||| | ||
Sbjct 207 TCACAGGATCTTCGCCATTGGGAGTCCTTAACTCCCGACGAGAAGCACTTCATCACTCAC 148
Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGTTT 61265
||| | || |||||||| || || || || || || |||||| || |||| |||||
Sbjct 147 GTGCTTGCCTTCTTTGCTGCATCTGATGGCATTGTTTTGGAGAATCTTGCTGGA-CGTTT 89
Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| | | || || ||||| || || || | || || || || || || ||||| ||
Sbjct 88 CATGAAAGAAGTTCAAGTCTCTGAAGCCAGAGCCTTTTATGGATTTCAAATCGCCATTGA 29
Query 61326 GAATGTCCACTCGGAGATGTACAGTGTT 61353
||| ||||||| |||||||||||| ||
Sbjct 28 AAATATCCACTCTGAGATGTACAGTCTT 1
>seq218924
Length=406
Score = 87.8 bits (96), Expect = 1e-12
Identities = 215/318 (68%), Gaps = 11/318 (3%)
Strand=Plus/Minus
Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG-CGGGCG-GAACG 61388
||||||| |||||||||||| ||||| | || || || |||| ||| || | |||
Sbjct 404 TCCACTCTGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAA-- 347
Query 61389 TGAA-CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447
||| || || ||| ||| || || || | || || ||| || || |||||||
Sbjct 346 -GAATCGGTTATTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGG 288
Query 61448 CCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507
| || || ||||| ||||||| | | || | ||| || | |||| || ||
Sbjct 287 CGTTGAAGTGGATTGACAGTACA---GAATCGTTCGCTGAGCGGATTTTGGCGTTCGCTT 231
Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC-CGCAATCTTTTGGTTGAAGAAACGT 61566
|| ||||| | || ||| || | |||| | | || || ||||| || ||||||
Sbjct 230 GTGTTGAGGGAATTTTCTTCTCAGG-TAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGT 172
Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626
|| || ||||| || | || ||| ||||||||||| ||| | || || || | |||
Sbjct 171 GGGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAAGGGCTTCAT 112
Query 61627 TGTGATTTTGCTGTTTTG 61644
|||||||||||| ||||
Sbjct 111 TGTGATTTTGCTTGTTTG 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396089622519680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |