Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq273947 181 8e-41 seq299969 109 4e-19 seq230622 107 2e-18 seq218924 87.8 1e-12 >seq273947 Length=700 Score = 181 bits (200), Expect = 8e-41 Identities = 413/611 (68%), Gaps = 24/611 (4%) Strand=Plus/Plus Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390 ||||||| |||||||||||| |||| |||| || || |||| || |||| | Sbjct 3 TCCACTCTGAGATGTACAGTCTTCTTCTCGAAACTTATATCAAAGATTCA----AACGAG 58 Query 61391 AA----CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGG 61446 || ||||| || ||| ||||||||| | || || ||| ||| || |||||| Sbjct 59 AAGAGTCGATTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGG 118 Query 61447 GCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 || || || |||||| ||| || || | |||| || || | |||||||||| Sbjct 119 GCGTTAAAGTGGATCGACAGCAC---GGAATCGTTTGCCGAGCGTATTTTGGCATTTGCT 175 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || || | || ||| || | | | ||| || | || |||||||| ||||| Sbjct 176 TGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATT-TTCTGGTTGAAAAAACG 234 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 |||| | ||||| || || || ||| ||||||||||| ||||| |||||||| | || Sbjct 235 TGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCA 294 Query 61626 TTGTGATTTTGC-TGTTT-TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 ||| |||||||| ||||| | |||||| | || ||| | | ||| | Sbjct 295 TTGCGATTTTGCTTGTTTGTTGTATTCA-----TTGTTGAGGAAGAAACTGAGTGAGAAT 349 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 || ||| |||||||||| || || ||| ||| || |||||| || ||| || Sbjct 350 CGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCC 409 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 ||||| || | || | || |||||| | | | ||| || || ||||||||||| Sbjct 410 TTGCCTGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTG 469 Query 61804 GCCGACCG-TCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCAT 61861 ||||| | | ||||| || ||||||| || ||||||||| |||| |||| Sbjct 470 GCCGATAGATTGGTTGGAGCTTTAGGGTATG--GCAAAATCTATAATGTTCAAAATCCAT 527 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 |||||| ||||| ||||||| || | || ||||| ||||| || || ||| | || | Sbjct 528 TTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTG 587 Query 61922 GCGACTATCAA 61932 | || |||||| Sbjct 588 GGGAATATCAA 598 >seq299969 Length=1347 Score = 109 bits (120), Expect = 4e-19 Identities = 198/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || ||||| | || ||| |||||||| || || ||||| ||||||| Sbjct 290 TGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 231 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| |||||| | || | ||| | | ||||| ||| | || Sbjct 230 GGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGCCATTGGGAATCCTTAACTTCCG 171 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || |||| ||||| | || || | || ||||| || ||||| || || ||||| Sbjct 170 ACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTTT 111 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | ||| ||| | | || || |||||| | || || | |||| Sbjct 110 TGGAGAATCTCGCCGGACGCTTCATGAAAGAAGTTCAAGTGGCTGAAGCCAGAGCCTTCT 51 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTT 61353 | || ||||| ||||| || |||||| ||||||| |||||||||||| || Sbjct 50 ATGGATTCCAAATTGCGATCGAGAATATCCACTCTGAGATGTACAGTCTT 1 >seq230622 Length=445 Score = 107 bits (118), Expect = 2e-18 Identities = 186/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||| ||||| ||||||||||||||||| | ||||| |||||| | Sbjct 267 ATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAGGAAGTCGATCTC 208 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || | || | | |||||| ||| | || || | || ||||| | || Sbjct 207 TCACAGGATCTTCGCCATTGGGAGTCCTTAACTCCCGACGAGAAGCACTTCATCACTCAC 148 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGTTT 61265 ||| | || |||||||| || || || || || || |||||| || |||| ||||| Sbjct 147 GTGCTTGCCTTCTTTGCTGCATCTGATGGCATTGTTTTGGAGAATCTTGCTGGA-CGTTT 89 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | | || || ||||| || || || | || || || || || || ||||| || Sbjct 88 CATGAAAGAAGTTCAAGTCTCTGAAGCCAGAGCCTTTTATGGATTTCAAATCGCCATTGA 29 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTT 61353 ||| ||||||| |||||||||||| || Sbjct 28 AAATATCCACTCTGAGATGTACAGTCTT 1 >seq218924 Length=406 Score = 87.8 bits (96), Expect = 1e-12 Identities = 215/318 (68%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG-CGGGCG-GAACG 61388 ||||||| |||||||||||| ||||| | || || || |||| ||| || | ||| Sbjct 404 TCCACTCTGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAA-- 347 Query 61389 TGAA-CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447 ||| || || ||| ||| || || || | || || ||| || || ||||||| Sbjct 346 -GAATCGGTTATTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGG 288 Query 61448 CCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 | || || ||||| ||||||| | | || | ||| || | |||| || || Sbjct 287 CGTTGAAGTGGATTGACAGTACA---GAATCGTTCGCTGAGCGGATTTTGGCGTTCGCTT 231 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC-CGCAATCTTTTGGTTGAAGAAACGT 61566 || ||||| | || ||| || | |||| | | || || ||||| || |||||| Sbjct 230 GTGTTGAGGGAATTTTCTTCTCAGG-TAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGT 172 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || || ||||| || | || ||| ||||||||||| ||| | || || || | ||| Sbjct 171 GGGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAAGGGCTTCAT 112 Query 61627 TGTGATTTTGCTGTTTTG 61644 |||||||||||| |||| Sbjct 111 TGTGATTTTGCTTGTTTG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396089622519680