Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq8335 140 1e-30 seq8259 118 4e-24 seq6763 80.6 1e-12 >seq8335 Length=4578 Score = 140 bits (154), Expect = 1e-30 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| ||||| | |||||||||| | || | || |||| ||| | || || || Sbjct 4544 TCTACGAGTCGGGTTGTCTAGGAATGCAGCCCCAATTAGGCGGTATATTCCGTCCAAGGC 4485 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||||| |||||||||||| | ||||||| | || ||||||||||| |||| Sbjct 4484 TAAATATTGGCGAGAGACCGATAGTGAACAAGTACCGCGAGGTAAAGATGAAAAAGACTT 4425 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | | ||||||| | ||||||||| Sbjct 4424 TGAAAAGAGAGTCAAAGAGTGCTTTAAATTGTCGGGAGGGAAGCG 4380 >seq8259 Length=134025 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 || || |||| |||||| |||| |||||||||||||| ||||||||||||||| || Sbjct 122260 GGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATTGTGAACTATGCCTGAGCGGG 122319 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 | ||||||||||||||||||||||||||| ||||||| | ||| Sbjct 122320 GCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTG 122362 Score = 102 bits (112), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||| ||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 116639 CGACCCATCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 116698 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 |||| || | | || ||| ||| || ||||| ||| | ||||||||| |||| Sbjct 116699 AACCAGTAAAGGGCAAGGAAGCTGATTGG---TGGGATCCCTAGCGGGTGCACCGCCGAC 116755 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 ||| | |||| | || || || || |||| |||||| |||| |||||||||||||| Sbjct 116756 CGACCTTGATCTTTTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGAT 116814 >seq6763 Length=6864 Score = 80.6 bits (88), Expect = 1e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||| ||||||| | ||||| | ||| ||||||||||| ||||| | ||||||| Sbjct 3571 GAAACTCTGCTGGAGGCCCACAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTA 3630 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 3631 TAGGGGCGA 3639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079748713250