Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10234 360 3e-97 seq3923 138 2e-30 >seq10234 Length=40260 Score = 360 bits (398), Expect = 3e-97 Identities = 257/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | ||| |||||||||||||||||||||| ||||| Sbjct 39322 TACTAGGTTGAATTACTATCGCGATG-CGGGAATCAGTAGGGTAAAACTAACCTTTCTCA 39380 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||| |||||||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 39381 CGACGGTTTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAAAACTTGGTGA 39440 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 39441 ATTCTGCTTCACAATGACAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGATAT 39500 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| | Sbjct 39501 GAACGCTTGGATGCCACAAGCCAGGTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 39560 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| | || |||||||||||||||| |||||||||| |||| ||||||| Sbjct 39561 CAAATTCGAAAGGTCTAAAGGATCGATAGGTCACACTTTCACGGTTCGTATTCA 39614 >seq3923 Length=207 Score = 138 bits (152), Expect = 2e-30 Identities = 94/106 (89%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 207 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTC 148 Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | ||||||||||| ||||||| |||||| |||| ||| || Sbjct 147 CGAAGCTCTAAAGGATCGCTAGGCCATGCTTTCACGGTTCGTACTC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854299907040