Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq8438 194 4e-47 seq900 84.2 5e-14 >seq8438 Length=4431 Score = 194 bits (214), Expect = 4e-47 Identities = 165/202 (82%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||| ||||| |||||| |||| ||||||||||||| |||||||||||||| |||||| Sbjct 380 CCTTTCTTCACTCACGCGATATTG-CTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCC 438 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || |||||||||||| || ||||| |||||| ||| Sbjct 439 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCG 498 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| | Sbjct 499 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACT 558 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 559 ACGCAGGCTCATCAAACAGCGC 580 >seq900 Length=833 Score = 84.2 bits (92), Expect = 5e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 115 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 358 GCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071874415200