Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq8438 257 5e-66 seq8769 87.8 5e-15 seq900 84.2 7e-14 seq6987 78.8 3e-12 >seq8438 Length=4431 Score = 257 bits (284), Expect = 5e-66 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 555 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 496 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 495 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 436 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG-AAGGC-CT 345 ||| ||| ||||||||| ||||||||| |||||| |||||||| || | ||||| | Sbjct 435 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATCGCGTGAGTGAAGAAAGGCAAT 376 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 375 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 316 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 315 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 256 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 255 CT-GGGCGTAAAGGGCACGTAGGCGGT 230 >seq8769 Length=279964 Score = 87.8 bits (96), Expect = 5e-15 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 353 GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 |||||||||| || || || | || ||||| | ||| ||||| |||||||||||||| Sbjct 279940 GTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAA 279881 Query 411 CTACGTGCCAGCAGCCGCGGTAATACG 437 || |||||||||||||||||||| ||| Sbjct 279880 CTCCGTGCCAGCAGCCGCGGTAAAACG 279854 >seq900 Length=833 Score = 84.2 bits (92), Expect = 7e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC 304 |||||||||||| ||| |||||||||||||||||||||||||||| || | |||||||| Sbjct 416 ACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGC 358 >seq6987 Length=8389 Score = 78.8 bits (86), Expect = 3e-12 Identities = 66/80 (83%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 353 GTAAAGCTCTGTCCTCAAGGA--AGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 |||||||||| | || || |||| ||||| | ||| ||||| |||||||||||||| Sbjct 80 GTAAAGCTCTTTGGTCGAGTGCGAGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAA 21 Query 411 CTACGTGCCAGCAGCCGCGG 430 || ||||||||||||||||| Sbjct 20 CTCCGTGCCAGCAGCCGCGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497424556160