Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq8438 205 2e-50 seq10168 75.2 3e-11 seq8769 75.2 3e-11 >seq8438 Length=4431 Score = 205 bits (226), Expect = 2e-50 Identities = 250/338 (74%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 332 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 273 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 272 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 213 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||||| ||||| | || || ||||| Sbjct 212 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCGAAACCAATTCA---CTTGAGTGAGAC 159 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | ||| || |||||||| |||| | | |||||| ||| Sbjct 158 AGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAA 99 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 98 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 39 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 335 | ||||||||||||||||||||||| |||||||||||| Sbjct 38 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 1 >seq10168 Length=47470 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| | |||||||||| | |||||||||||||||| |||| |||||||| ||||| Sbjct 28582 CGAAAGCATAGGGAGCAAACGGAATTAGATACCCTGGTAATCCATGCCGTAAATGATGA 28640 >seq8769 Length=279964 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 52 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 279904 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACG 279854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203059045120