Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10234 572 5e-161 >seq10234 Length=40260 Score = 572 bits (634), Expect = 5e-161 Identities = 444/524 (85%), Gaps = 7/524 (1%) Strand=Plus/Plus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||||| || ||| ||||||||||||||| |||| | ||||| ||||||| ||||| Sbjct 39646 TCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGAACACCTGTGTTAT 39705 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 |||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 39706 CTTTTAACAGATGTACCGCCCCAGCCAAACTCCCCATCTGACAATGTCCTCCGCCCGGAT 39765 Query 126 CGGCCCGC-GAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCA 182 | || || |||| | |||| ||| || | || | || | ||| || | |||| Sbjct 39766 CAACCTGCCGAAGCAAGCCTTGGGACCAAAAGAAGGG-GTTGTACACCGCCTCTGATTCA 39824 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | ||||||||| |||| ||| || || ||||||||||||||||||| |||||| Sbjct 39825 CGTAGTAAGTAAAATAACGTTAAAAGTCGTTGTATTTCACTTGCGCCGAA---GCTCCCT 39881 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 39882 TTTATACTACACCTCTCAAGTCATTTCAAAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 39941 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| |||||||| ||||||||| |||||||| ||||||||| || ||||||| Sbjct 39942 CTTCTTTCCCTGCTGATTCTGCCAAGCCCATTCCCTTGCATGTGGTTTCACTGGATAGTA 40001 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || |||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct 40002 GACAGGGACAGTGAGAATCTCGTGAATCCATTCATGCACGTCATTAATTAGATGACGAGG 40061 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||| |||||| || ||||||| || ||||||||||| Sbjct 40062 CATTTGGCTACCTTAAGAGAGTCATATTTACTCATGCTGTTTACCTGCACTTGGTTGAAT 40121 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 | ||||||||||||||||||||||||| ||||||||||||||| Sbjct 40122 TACTTCACTTTGACATTCAGAGCACTGCACAGAAATCACATTGC 40165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635008436320