Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3367 553 5e-155 seq3267 262 1e-67 seq8382 114 4e-23 >seq3367 Length=1710 Score = 553 bits (612), Expect = 5e-155 Identities = 435/513 (85%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||| | |||| ||||||||||| |||| |||||||||||||||||| Sbjct 1408 GTATTCATTCCAATTTCCAGACTCAAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 1349 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1348 CCCCATGTCAGGATTGGGTAATTTGCGCGCATGCTACCTTCCTTGGATGTGGTAGCCGTT 1289 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| ||||||||||| |||| |||| |||| || ||||||||| Sbjct 1288 TCTCAGGCTCCCTCTCCGAAATCGAACCCTGATTCTCCGTCACCCTTTACCACCATGGTA 1229 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||| ||||||||||||||||||||| | |||||||||||| ||||| || Sbjct 1228 TGCCACTATCTTACCATCGAAAGTTGATAGGGTAAAAATTTGAATGATGTGTCGCCAGCA 1169 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AG----GG 293 | ||| ||||||||| ||| || |||| |||||||| || |||| ||| || | Sbjct 1168 CTAAGACCATGCGATCCGTCAATTTATCATGAATCATCA--GAGCAACGAGCAGAGCTCG 1111 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || ||||||| |||||| |||||||| ||| ||||| Sbjct 1110 CGTTGACCTTTTATCTAATAAATCCATCCCTTCCAGAAGTCAGGGTTTTTTGCACGTATT 1051 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 1050 AGCTCTAGAATTATTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 992 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 |||||||| |||||||||||||||| || | ||| | | ||||||| |||||||||| | Sbjct 991 TTTAATGAACCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGAT 932 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||| |||||||||||||||||| Sbjct 931 TAATCTTTAAGACAGGCATATGACTACTGGCAG 899 >seq3267 Length=1657 Score = 262 bits (290), Expect = 1e-67 Identities = 159/168 (95%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||| Sbjct 1485 GTACTCATTCCAATTACCAGACTCAAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 1544 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1545 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1604 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 ||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1605 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTT 1652 >seq8382 Length=30617 Score = 114 bits (126), Expect = 4e-23 Identities = 86/100 (86%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 328 GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 ||||||||||||| | ||| |||||||||||| |||||| ||||||||| ||||| || Sbjct 25552 GAAGTCGGGGTTTGTTGCACGTATTAGCTCTAAAATTACTACGGTTATCAGAGTAGT-AG 25610 Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 ||| |||||| ||| ||||||||||||||||||||||| Sbjct 25611 TTACCATCAAACAAATTATAACTGATTTAATGAGCCATTC 25650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510223056640