Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9146 129 5e-25 seq11595 114 1e-20 >seq9146 Length=70564 Score = 129 bits (142), Expect = 5e-25 Identities = 545/845 (64%), Gaps = 22/845 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || |||||||| | || || || ||| | || | ||| Sbjct 54778 ATGTACAAGAAAGCCGAAGCATCATTCTGGACCGCCGAAGAAGTAGATCTATCACATGAC 54719 Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||| |||||| | || ||| |||||||| || ||||| ||||| || | || Sbjct 54718 GGACGTGATTGGGAGAATCTAAACGA-CGGTGAACGTCACTTCATCAAACACGTTCTCGC 54660 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 || || || || || || || ||||| |||||| | || ||| | || Sbjct 54659 TTTTTTCGCTGCATCAGATGGAATCGTTTTAGAGAATCTTGCTTCTCGATTCATGTCAGA 54600 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| |||||||||||| ||| ||||| || || || || || |||||| | || Sbjct 54599 TGTTCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTTCAAATCGCGATTGAGAATATTCA 54540 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||| ||| | || ||||||| || |||| || || | || | Sbjct 54539 TTCTGAGATGTATAGTCTCCTTCTCGATACATATATCAAAGATAATAAAGAGAGAGATCA 54480 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | || || || || || || || || | | |||||| | ||||| | | Sbjct 54479 TCTCTTTCGCGCAATTGAAACTATCCCTTGCGTTACGAAGAAAGCACAATGGGCGATGAC 54420 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | | | | || |||| ||||||| | | || || || || || Sbjct 54419 TTGGAT---CGATGGATCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGA 54363 Query 61515 GGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 ||| | || ||| || | | |||| ||||||| ||| | |||||||| || || | Sbjct 54362 AGGTATCTTCTTCTCCGGTAGCTTTTG-TTCAATCTTCTGGCTAAAGAAACGAGGTCTCA 54304 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| ||| | || ||| ||||| | || || || ||||| ||| | || ||||||| Sbjct 54303 TGCCTGGTTTAACTTTCTCAAATGAACTAATCTCTCGAGACGAAGGCTTACACTGTGATT 54244 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGA-ATCG--TCCGTCGGAGGAGCGTGTG- 61689 | || || || || | || |||| ||| | || | |||| ||||| ||| Sbjct 54243 TCGC---TTGCCTTCTCTA---CTCTCTGTTGAGAACGAAGCTTACGGAAGAGCGCGTGA 54190 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 || | || || | || ||||| |||||| || ||| | ||||| | || Sbjct 54189 AGTCA-ATCGTCTGCGACGCGGTTGAAATCGAAAGAGAGTTTGTATGCGACGCGCTTCCA 54131 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | | | || ||||| ||| |||||| ||||||||||| |||||||| || Sbjct 54130 TGCGCGTTGGTTGGAATGAACCGTGAGCTAATGAGTCAGTATATTGAGTTTGTTGCGGAT 54071 Query 61810 CGTCTGTTGG--TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 | | ||| ||| | ||||| | || | || | || ||| || ||||||| Sbjct 54070 AGATTAATGGTTTCG-CTAGGGTACGGTAAGG-TGTACGGTGTGACAAATCCGTTTGATT 54013 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| | || || || | || || || || |||||||| |||||||| || || | Sbjct 54012 GGATGGAACTTATATCACTACAAGGTAAAACTAACTTTTTCGAAAAACGTGTTGGGGATT 53953 Query 61928 ATCAA 61932 | ||| Sbjct 53952 ACCAA 53948 >seq11595 Length=173172 Score = 114 bits (126), Expect = 1e-20 Identities = 358/546 (66%), Gaps = 9/546 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||| || || || ||||| || |||||||| | || || || ||| | || ||||| Sbjct 65409 ATGTATAAGAAAGCCGAAGCATCGTTCTGGACTGCTGAAGAAGTAGATCTATCACAAGAC 65350 Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || |||||| | || ||| ||| |||| || || || ||||| || | || Sbjct 65349 GGACGCGATTGGGAGAATCTAAACGA-CGGCGAACGTCACTTTATCAAACACGTCCTCGC 65291 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| || ||||| || || ||||| |||||| | || ||| | || Sbjct 65290 TTTCTTCGCTGCTTCAGATGGAATCGTTTTAGAGAATCTCGCTTCTCGATTCATGTCAGA 65231 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| |||||||||||| ||| ||||| ||||| || || || |||||| | || Sbjct 65230 TGTACAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAAATCGCGATTGAGAATATTCA 65171 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||| ||| | || ||||||| || |||| || || | || | Sbjct 65170 TTCTGAGATGTATAGTCTCCTTCTCGATACTTATATCAAAGATAACAAAGAGAGAGATCA 65111 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || ||| || || || || || ||| || | |||||| | ||||| | | Sbjct 65110 TCTCTTTCGTGCTATTGAAACTATTCCTTGCGTTG-CGAAGAAAGCTCAGTGGGCGATGA 65052 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | | | || || | ||||||| | | || || || || | Sbjct 65051 CGTGGAT---CGATGGATCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTG 64995 Query 61514 AGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 | ||| | || ||| || | | |||| | | ||||| ||| | |||||||| ||||| Sbjct 64994 AAGGTATCTTCTTCTCCGGTAGCTTTTG-CTCTATCTTCTGGCTAAAGAAACGAGGACTC 64936 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || | || ||| || ||||| || || || ||||| ||| | || || ||| Sbjct 64935 ATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCTCGAGACGAAGGCTTACACTGCGAT 64876 Query 61633 TTTGCT 61638 || ||| Sbjct 64875 TTCGCT 64870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397511236607600