Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq8473 167 3e-36 seq10724 159 4e-34 seq9882 143 3e-29 seq8998 122 1e-22 seq8685 104 3e-17 >seq8473 Length=72639 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| ||||| ||||||||||| || ||||| ||||| || |||| || ||| Sbjct 6452 TGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTAC 6393 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || || ||||||||| ||||||| | |||||||||||| ||| | |||| |||| ||| Sbjct 6392 TCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGAT 6333 Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGC 161133 |||||||| ||| |||||| |||||||| ||| | | ||||| ||| || || || Sbjct 6332 CAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGT 6273 Query 161134 GTTGCTTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGA 161180 | ||||||||| ||||||||||| ||||| || | |||||||| Sbjct 6272 GCTGCTTATCCTACTTCTGATGTTGTTATTCAAACCCACCAAGAAGA 6226 >seq10724 Length=33194 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| || ||| ||||| ||||| || ||||| ||||| || |||| ||| ||| Sbjct 30723 TGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTACCTTAC 30782 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || |||||||||||| ||||||| | |||||||||||| ||| | |||| |||| ||| Sbjct 30783 TCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGAT 30842 Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGC 161133 ||||| || ||| ||| || ||||||||||| ||| ||||||||| || || || Sbjct 30843 CAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTGT 30902 Query 161134 GTTGCTTATCCCACTTCTGATGT 161156 | |||||||| ||||||||||| Sbjct 30903 GCAGCTTATCCTACTTCTGATGT 30925 >seq9882 Length=79551 Score = 143 bits (158), Expect = 3e-29 Identities = 186/256 (73%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 160263 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAAC 160322 ||| |||| || | | |||| ||||| ||| | || |||| |||||||||| || || | Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 160323 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 160382 |||| | ||||| || || || |||||| | ||||| ||||| |||||| | || || | Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 160383 TGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAA 160442 | || || ||||||| | | | | || ||||||||| | |||| || || ||||||| Sbjct 46124 TATTTAGTG-TATGCATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 46066 Query 160443 CTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCG 160502 ||| || || | ||||||| ||||||||||| || | || |||||| | || | Sbjct 46065 ATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAG 46006 Query 160503 CAGCACATGGCTACTT 160518 | || ||||| || || Sbjct 46005 CTGCTCATGGTTATTT 45990 >seq8998 Length=67453 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 ||||| ||||| | | || || ||||| |||||||| |||||| ||| ||||| || Sbjct 36714 GATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGC 36773 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||||||||| || ||||||||||||||||||| || ||| ||| || |||||| Sbjct 36774 AGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCT 36833 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || || || |||||| |||| | || || | ||| |||| || || ||| Sbjct 36834 GATGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGTGTGGCT 36893 Query 161140 TATCCCACTTCTGAT 161154 || || | |||||| Sbjct 36894 TACCCAAAGTCTGAT 36908 >seq8685 Length=252540 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||||| ||| | | || || ||||| |||||||| ||||| ||| || || ||| Sbjct 168759 GATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGT 168818 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||||| || ||||| |||||||||||||||| ||| || ||||| || Sbjct 168819 AGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCG 168878 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || || || ||||||| ||| |||| || | ||| |||| || || ||| Sbjct 168879 GATGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCT 168938 Query 161140 TATCC 161144 ||||| Sbjct 168939 TATCC 168943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551295257877000