Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9882 140 4e-28 seq8685 95.1 1e-14 seq8998 87.8 2e-12 >seq9882 Length=79551 Score = 140 bits (154), Expect = 4e-28 Identities = 190/264 (72%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083 ||| | | |||||||| | | | |||| ||||| |||| ||| ||| |||| ||||| Sbjct 46252 TTTTTTTTATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCA 46193 Query 161084 GGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGG 161143 ||| || |||||| | || || ||||| || |||||||| ||||| |||||||| ||| | Sbjct 46192 GGCTGAGCACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAG 46133 Query 161144 TGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAAC 161203 || || || || | | ||||| ||| | || |||||| || | | ||||| Sbjct 46132 CGGCTCCCTATTTAGTGTA-TGCATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAAC 46074 Query 161204 CACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAA 161263 ||| || || || || || | ||||||| || ||||||||| || | || ||||| Sbjct 46073 CACAGAAAATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAA 46014 Query 161264 CATCGTCGCTGCTCATGGTTACTT 161287 | | || |||||||||||||| || Sbjct 46013 CTTTGTAGCTGCTCATGGTTATTT 45990 >seq8685 Length=252540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 || |||||||| || |||||| ||| || || | |||||||||| | || || || Sbjct 168771 ATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGTAGAGCTGGTGCG 168830 Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 ||||| | ||||||||||| || | |||| ||||| ||| ||| || ||| Sbjct 168831 TGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCGGATGGTTCGTTT 168890 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTTCG 50275 |||||||||| ||| |||| ||||| ||| ||||| ||||| ||| ||| || Sbjct 168891 CTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCTTATCCACAGTCT 168950 Query 50276 GACTGTACTATTGAAAC 50292 || ||| |||| |||| Sbjct 168951 GATTGTGTTATTCAAAC 168967 >seq8998 Length=67453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 || |||||||| || |||||| ||| || ||| | ||| ||||| | || || || Sbjct 36726 ATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGCAGAGCTGGTGCT 36785 Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 ||||| ||||||||||||| || | ||| ||||||||| ||| || ||| Sbjct 36786 TGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCTGATGGTTCGTTT 36845 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCT 50263 ||||||||| |||| | || ||||| ||| ||||| ||||| ||| Sbjct 36846 CTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGTGTGGCT 36893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559246093406000