Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11510 163 1e-37 seq300 123 1e-25 seq28434 120 1e-24 >seq11510 Length=33421 Score = 163 bits (180), Expect = 1e-37 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| |||| ||| |||| ||| | || || || Sbjct 30330 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAGATTCCGTCCAAGGC 30271 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 30270 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 30211 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || ||| ||||| ||| || | ||||||||| |||||||||| Sbjct 30210 TGAAAAAAGAGTCAAAGAGTGCTTGAAATTGTCGAAAGGGAAG 30168 Score = 156 bits (172), Expect = 2e-35 Identities = 195/258 (76%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC--C 468 || ||| |||||| |||||||||||| |||| | ||||||| ||||| || | | Sbjct 29937 GTTTTGAAACACGAACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACGTC 29878 Query 469 GTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 || | || || ||| ||| || ||||||||| | || |||||| |||||| | | Sbjct 29877 GTAAGGCGCAAGGAAGCTGACTGG---TGGGAACCCCCG-GGTTGCACCGTCGACC-AGC 29823 Query 528 CTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 || | ||||| || || || |||| |||||| |||| ||| ||||||| |||||| Sbjct 29822 CTTAA-TCTTCTGAGAAGGGTTCGAGTGCGAGCATGCCTGTCGGGGCCCGAAA-ATGGTG 29765 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||||||| ||| |||||||||||| || |||||||||||||||| ||||||| | || Sbjct 29764 AACTATGCTTGAGCAGGGTGAAGCCATAGCAAACTCTGGTGGAGGCCCGCAGCGATACTA 29705 Query 646 GCGTGCAAATCGATCGTC 663 |||||||||| || ||| Sbjct 29704 ACGTGCAAATCAATAGTC 29687 Score = 125 bits (138), Expect = 3e-26 Identities = 123/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||| | |||| ||| |||| ||| | || || ||||||| Sbjct 24419 GAGTCGGGTTGTTTGGGAATGCAACCCTAATCGGGCGGTAGATTCCGTCCAAGGCTAAAT 24360 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | ||||||||||| ||||||| | || ||||||||||||| |||||| Sbjct 24359 ACAGGTGAACGACCGATAGCGAACAAGTACGGCGAGGGAAAGATGAAAAGGACTTTG--- 24303 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 | ||||| ||| || | ||||||||| || ||||||| Sbjct 24302 AAAGAGTCAAAGAGTGCTTGAAATTGTCGAGAGGGAAG 24265 >seq300 Length=54110 Score = 123 bits (136), Expect = 1e-25 Identities = 195/275 (71%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGT 470 ||||| | |||||||||||| | | |||| | ||| ||| ||||| |||||| | Sbjct 6185 TCTTGATATACGGACCAAGGAATTTCACATGTGTGCAAGTCAACGGGTGAGTAAACCCAT 6244 Query 471 GCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACCGATCC 528 | || || ||| ||| | || |||||| | |||| |||||| |||||||| Sbjct 6245 AAGGCGCAAGGAAGCTGACTTGGGG---GAACCCCTCGGGGTTGCACCACTGACCGATCT 6301 Query 529 TGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588 |||| | | || || || || |||||| || | |||||| |||||||||||||| Sbjct 6302 TGATCTTCTGAGAAGGGTTCTGGTGCGAGCATGCCTATCGGGACCTGAAAGATGGTGAAC 6361 Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 ||| | ||| | | ||||| ||| ||||| ||||| || || |||| || | | | Sbjct 6362 TATCCTTGAGCACGACGAAGCTAGACGAAACACTGGTCGAAGCCCGCAACGATAATAACA 6421 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||| | | |||||||||||||| Sbjct 6422 TGCAAATCGTTCGTCTGACTGGGGTATAGGGGCGA 6456 Score = 82.4 bits (90), Expect = 3e-13 Identities = 130/192 (68%), Gaps = 27/192 (14%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||||||||||||| ||||||||| |||| ||| ||| ||| || || | Sbjct 5764 TCTACGAGTCGAGTTGTTTGAGAATGCAGCCCTAATCGGGCAGTAGATTCTGTCCAAGTC 5823 Query 95 TAAATATTGGCCAGAGA-----------------CCG----------ATAGCGCACAAGT 127 |||||| || ||||| ||| |||||| |||||| Sbjct 5824 TAAATACATGCAAGAGATGGATAGTGAACAAGTACCGCGAGGGACTAATAGCGAACAAGT 5883 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | |||| ||||||||||||| |||||| ||||||| | ||| || | ||||||||| Sbjct 5884 ACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGATTCAAAGAGTGCTTGAAATTGTC 5943 Query 188 GAAAGGGAAGCG 199 | ||||| ||| Sbjct 5944 GGGAGGGATGCG 5955 >seq28434 Length=7437 Score = 120 bits (132), Expect = 1e-24 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || ||||| |||| || ||| |||| | |||| |||||||||||||||||| ||| Sbjct 5717 GAAGGATTCGAGTGTGACCATGCCTGTCAGAACCCAAAAGATGGTGAACTATGCTTGAGC 5776 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||| ||||||||||| | |||||||| |||| || || | |||||||||||| Sbjct 5777 GGGGCGAAGTCAGAGGAAACTATTGTGGAGGCCCGCAACGATTTTAATGTGCAAATCGAT 5836 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | | | |||||||||||||||| Sbjct 5837 CATTTTACTTGGGTATAGGGGCGA 5860 Score = 116 bits (128), Expect = 2e-23 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || || ||||| ||||| |||||||||||| ||| ||| |||| ||| | || || || Sbjct 5285 TCTACAAGTCGGGTTGTCTGGGAATGCAGCCATAATCGGGTGGTAGATTCCGTCCAAGGC 5344 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||| |||||||||| ||||| |||| ||||||||||||| |||| Sbjct 5345 TAAATACGGGCGAGACACCGATAGCGAGGAAGTA-CGTGAGGGAAAGATGAAAAGAACTT 5403 Query 155 TGGAAAGAGAGTTAAAAAG 173 || ||||||||| ||| || Sbjct 5404 TGAAAAGAGAGTCAAAGAG 5422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078961884350