Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq23542 188 2e-45 seq15335 188 2e-45 seq27585 114 3e-23 seq23034 114 3e-23 seq10644 111 4e-22 seq27249 95.1 3e-17 seq3472 86.0 2e-14 >seq23542 Length=65630 Score = 188 bits (208), Expect = 2e-45 Identities = 244/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 29995 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 30054 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 30055 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 30111 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 30112 AAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 30168 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | ||| || ||||||| || |||| | | |||||| |||| || Sbjct 30169 GAGAGTGGAATTTCGTGTGGAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 30228 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 30229 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 30288 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 30289 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 30322 >seq15335 Length=10014 Score = 188 bits (208), Expect = 2e-45 Identities = 244/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 6020 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 6079 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 6080 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 6136 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 6137 AAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 6193 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | ||| || ||||||| || |||| | | |||||| |||| || Sbjct 6194 GAGAGTGGAATTTCGTGTGGAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 6253 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 6254 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 6313 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 6314 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 6347 Score = 107 bits (118), Expect = 5e-21 Identities = 209/302 (69%), Gaps = 5/302 (2%) Strand=Plus/Plus Query 34 GCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGC 93 |||| ||||||||||||||| || ||||||||||| |||||| | |||||||||||| Sbjct 17 GCCACCAGCCGCGGTAATACAGTGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGC 76 Query 94 GTGCGCAGGCGG-TTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCA 152 || | || || |||| |||| | || ||||||| ||||| || || ||| || Sbjct 77 GTCTGTAGATGGATTGT-TAAGTCCACCGTCAAATCCCAGGGCTCAATCTTGGACAGGCG 135 Query 153 TTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAA 212 | | ||| || |||| | || || | |||||| | ||| ||| ||||| Sbjct 136 GTGGAATTTGCTAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCTGGTGGAGCGGTGAA 195 Query 213 ATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACG 272 |||||| || || || ||||||||| || || ||| | ||||| ||| || Sbjct 196 ATGCGTTGAGAT-CAGAAGAACACCAACGG-AAAAGCACTCTTCTGGGCCGCTACTAACA 253 Query 273 CTCATG-CACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTA 331 |||| | || ||||| ||||| | || ||||||| ||||| |||||| ||| || Sbjct 254 CTCAAGAGACAAAAGCTAGGGGATCGAATGGGATTAGCCACCCTACTAGTCCTAGCCGTA 313 Query 332 AA 333 || Sbjct 314 AA 315 >seq27585 Length=13586 Score = 114 bits (126), Expect = 3e-23 Identities = 271/409 (66%), Gaps = 9/409 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| | ||||||| |||||||| | |||||||||| ||| ||| Sbjct 2199 TATCTGGGGAATAAGCATCAGCTAACTCTTTGCCAGCAACTGCGGTAATACAGAGGATGC 2258 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| | ||| | ||| |||||||||| | || || | | ||| | || Sbjct 2259 AAGCGTTATCCATAATGATTGGCCGTAAAGCGTCTGTTGGTGGCTTTTAAAGTCCACCGT 2318 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||| |||| ||| | | | || || | ||| | || Sbjct 2319 CAAATCCCATGGCTCAACCCTGGACAGGTGGTGGAAACGGCTAAGTTGTAGTACGGTAGG 2378 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | || || ||||||||||| || || | | ||||| ||| | Sbjct 2379 GGCAGAGGGAATTTCCGATGGAGTGGTGAAATGCGTTGAGATCGGAAAGAACATCAACGA 2438 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 | || | |||| ||||||| |||| |||||||| ||||||| || | Sbjct 2439 CAAA-------CGTTGGGCCGCCACTGACACTCAGAGACGAAAGCTAGGGGAGCGAATGG 2491 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||| | | || | | | Sbjct 2492 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCGCTGTGCGTATCGA 2551 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || |||||||||||| |||| ||||||||||| ||| Sbjct 2552 CCCGTGCAGTGCTATAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 2600 >seq23034 Length=25253 Score = 114 bits (126), Expect = 3e-23 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | ||| || ||||||| || |||| | Sbjct 8410 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCCGGAGATTTAC 8351 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| | ||||||||| |||| || ||| || | |||||| Sbjct 8350 GAAGGAACGCCAAAAGTGAAGGCAGCTTTTTGGGTCCCTACCGACCCTGGGGTGCGAAAG 8291 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| ||| ||||||||||||||||||||||| | | |||||||| Sbjct 8290 CATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGTCATAAACGAT 8240 >seq10644 Length=21193 Score = 111 bits (122), Expect = 4e-22 Identities = 260/384 (68%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 34 GCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGC 93 |||| ||||||||||||||| || ||||||||||| |||||| | |||||||||||| Sbjct 18189 GCCACCAGCCGCGGTAATACAGTGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGC 18130 Query 94 GTGCGCAGGCGG-TTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCA 152 || | || || |||| |||| | || ||||||| ||||| || || ||| || Sbjct 18129 GTCTGTAGATGGATTGT-TAAGTCCACCGTCAAATCCCAGGGCTCAATCTTGGACAGGCG 18071 Query 153 TTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAA 212 | | ||| || |||| | || || | |||||| | ||| ||| ||||| Sbjct 18070 GTGGAATTTGCTAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCTGGTGGAGCGGTGAA 18011 Query 213 ATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACG 272 |||||| || || | | |||||||| || || ||| | || || |||||| Sbjct 18010 ATGCGTTGAGATCAGAAATAACACCAACGG-AAAAGCACTCTACTAGGCCGCTACTGACA 17952 Query 273 CTCATG-CACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTA 331 |||| | | ||||| ||||| | || ||||||| ||||| ||||||| ||| || Sbjct 17951 CTCAAGAGATAAAAGCTAGGGGATCGAATGGGATTAGCCACCCTAGTAGTCCTAGCCGTA 17892 Query 332 AACGATATCAACTAG---TTGTTGGGGATTTAC---TTCCTTGGTAACGTAGCTAACGCG 385 || ||| ||||| || || | ||| || | | || || |||| || ||| Sbjct 17891 AATGATGGATACTAGGCACTG-TGCGTATTGACCGGTGCAGTGCTA---TAGCGAATGCG 17836 Query 386 TGAAGTTGACCGCCTGGGGAATAC 409 | |||| ||||||||||| ||| Sbjct 17835 TTAAGTGTCCCGCCTGGGGAGTAC 17812 >seq27249 Length=78643 Score = 95.1 bits (104), Expect = 3e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 2 ATACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 61 ||| |||| ||||||| | ||||||| | | ||||||||||||||||||| ||| || Sbjct 44575 ATATCTGAGGAATAAGTATCGGCTAAATCTATACCAGCAGCCGCGGTAATACAGAGGATG 44516 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTG 96 ||||||||| |||||| | |||||||||||| || Sbjct 44515 CAAGCGTTATCCGGAATGATTGGGCGTAAAGCATG 44481 >seq3472 Length=21652 Score = 86.0 bits (94), Expect = 2e-14 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171 GAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAG 230 ||||| | || ||| | || |||| | ||| | ||||||| | |||| | | || Sbjct 15878 GAGTGAGACACAGGAGAGTAAAATTTCGTGTGGCGGGGTGAAATATGGAGATTTACGAAG 15819 Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290 ||||||||| ||||||| | | ||||| |||||| || | |||||| || Sbjct 15818 GAACACCAAAAAAGAAGGCAACTCTCTGGGTCCCTACTGACACTAGGGTGTGAAAGCATG 15759 Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||| || |||||| ||||||||||||| ||| || |||||||| Sbjct 15758 GGGAGCGAATAGGATTCGATACCCTGGTAGCCCATACCATAAACGAT 15712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288975872288