Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq21680 138 2e-30 seq29849 134 2e-29 seq15227 127 3e-27 seq24944 111 2e-22 seq5077 78.8 1e-12 seq6594 77.0 5e-12 >seq21680 Length=18110 Score = 138 bits (152), Expect = 2e-30 Identities = 178/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 13338 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 13280 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 13279 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 13222 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| |||| Sbjct 13221 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCA 13171 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | |||| | | | |||| |||||| ||||| || ||||||||||||||| | Sbjct 13170 TCGATATGGTTCTCTCAAGCGCCCTAGTATACTCTATGTGTTCACCTGTGTCGGTTTCGG 13111 Query 246 GTA 248 ||| Sbjct 13110 GTA 13108 >seq29849 Length=8764 Score = 134 bits (148), Expect = 2e-29 Identities = 177/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| | || | ||||||||| ||||| ||| ||| | || Sbjct 5767 CCTTCCAGCACCGGGCAGGTGCCAAACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 5709 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| || ||||||||| ||| | | | ||| | | | |||| | Sbjct 5708 CGTGTTTTTAATATACAGTCGCTACCCCCAGGTATGTGCCGCTTTCCTAA--TCAAAAGA 5651 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 5650 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 5600 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || |||||||||||||||| | Sbjct 5599 TCGACATGGTTCTCTCAACCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTAGG 5540 Query 246 GTA 248 ||| Sbjct 5539 GTA 5537 >seq15227 Length=25994 Score = 127 bits (140), Expect = 3e-27 Identities = 166/227 (73%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 22 AGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAAC 81 ||| ||||| | ||||||||| ||||| ||| ||| | |||||||||||| ||||| Sbjct 25954 AGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTGTGTTTTTAATAAAC 25896 Query 82 AGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTG 141 ||||||| ||| || | | ||| | | | |||| | | || || | Sbjct 25895 AGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT--------AGGAGAG 25846 Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 25845 -CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 25787 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||||||||| |||| Sbjct 25786 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 25740 >seq24944 Length=24956 Score = 111 bits (122), Expect = 2e-22 Identities = 171/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| | ||||||||||| || || | || ||||| ||||| ||| ||| | || Sbjct 5627 CCTTCTAGCACCGGGCAGGTGTTAGACTCTAAACATCATGTTACCA-CTTAGCAGAGTCC 5569 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| |||||| ||||| ||| ||| | | ||| || | | | || | Sbjct 5568 TATGTTTTTTATAAACAATCGCTACCCACTAGTATGTGCCACTTTCCTAATCCAAAGAT- 5510 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || | |||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 5509 ---------AGGAGAG-CACCCCTTCTCCGGAAGTTACGGGGTCATTTTGCCGAGTTCCT 5460 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||| |||| |||| | Sbjct 5459 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACATGTTCACCTTTGTCAGTTTGGG 5400 Query 246 GTA 248 ||| Sbjct 5399 GTA 5397 >seq5077 Length=55412 Score = 78.8 bits (86), Expect = 1e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||| |||| ||||| | || ||||| | | |||| | Sbjct 52694 GGCACCCCTTCTCCCGAAGTTACCGGGCTATTTTTCTGAGTTCCTCAGAGAGAGTTGTCT 52753 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 || | ||| |||||||||| || |||| ||||||||| Sbjct 52754 CGCGCCCCTAGGTATTCTCTATCTACCCACACGTGTCGGTT 52794 >seq6594 Length=55411 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 48866 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 48808 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 48807 TGTGTTTTTGGTAAACAGTCGC 48786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694074433381