Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq15227 86.0 7e-15 seq29849 80.6 3e-13 >seq15227 Length=25994 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 25745 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 25804 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 25805 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 25844 >seq29849 Length=8764 Score = 80.6 bits (88), Expect = 3e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | || || ||||||| |||| ||||| ||| || | |||| Sbjct 5543 AAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGGTTGAGAGAACCATGTCGAAGG 5602 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||| |||||| |||||| |||||||||||| || |||| Sbjct 5603 AACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530950949038