Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq29849 187 6e-45 seq5077 172 1e-40 seq24944 161 3e-37 seq21680 161 3e-37 seq9783 158 3e-36 seq29675 141 2e-31 seq15227 89.7 1e-15 seq24047 87.8 5e-15 seq6594 87.8 5e-15 >seq29849 Length=8764 Score = 187 bits (206), Expect = 6e-45 Identities = 291/415 (70%), Gaps = 27/415 (7%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | | |||||||| || Sbjct 5953 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGAAGACAGCGGGGCA 5894 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| ||| ||||| ||||| |||||||||||||||||| |||||| Sbjct 5893 GTCGTTACACCATTTGTGTAGGTCTCTACTTATGCGACAAGGAATTTCGCTAACTTAGGC 5834 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTAA 185 | ||| ||||| ||||||||||||||||||||| | |||| | ||| ||| Sbjct 5833 CAGTTGGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAA-------CCCTTA--TAA 5783 Query 186 CCC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 | | | | ||||||| |||||||||||| | || || |||||| || || | Sbjct 5782 CACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGCCAAACTCTATACATCGTGTTACC 5723 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 || ||||||| | |||||||||||| |||||||| | || ||||| | | | | Sbjct 5722 ACTTAGCAGAGTCCCGTGTTTTTAATATACAGTCGCTACCCCCAGGTATGTGCCGCTTTC 5663 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 | | | | || || |||| ||||||||||||||||||| | Sbjct 5662 CTAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGG 5618 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | |||||||||| |||| | |||| |||||| Sbjct 5617 TCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAACCGCCCTAGTATACTCTAC 5563 >seq5077 Length=55412 Score = 172 bits (190), Expect = 1e-40 Identities = 203/276 (74%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||||| || || ||||||| ||| ||| |||||| ||| |||||||| Sbjct 52404 ATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAAGACAGTGCCTAGATCGTTAC 52463 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 || || |||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 52464 ACCTTTTGTGCGGGTCGGAACTTACCCGACAAGGAATTTCACTACCTTAGGACCGTTATA 52523 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 ||||||||||||||| |||||||||| | |||| || | ||| | Sbjct 52524 GTTACGGCCGCCGTTCACCGGGGCTT---------GGGTCGCCGGAGGTCACCAACTTCC 52574 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || ||||||| |||| || |||||||| ||| |||| | ||| | ||| | ||| Sbjct 52575 TTGACCTTCCTGCACTGGACAGGCGTCCGCCCCCATACATGGTCTTACCACTTTACGGAG 52634 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 |||||| ||| |||||| |||| ||||||| Sbjct 52635 ACCTGTGTGTTTGGTAAACAATCGCCCGAGCCTGGT 52670 >seq24944 Length=24956 Score = 161 bits (178), Expect = 3e-37 Identities = 284/414 (69%), Gaps = 25/414 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| ||| | | ||| | || | Sbjct 5813 TACTCCGCATCTTCACGGAGAATTCAATTTCACCATGTCCATGTCGTAGAGAACGGGGTA 5754 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 5753 GTCGTTATACCATTTATGCAGGTCACTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 5694 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||| ||||| ||||||||| || | ||||| |||| Sbjct 5693 CAGTTAGAGTTACTATCGCTGTTTATCGGGGCTTCAATTCAAAGCTT--------ATAAC 5642 Query 187 -CCCATCAATTA-ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | ||| | | |||||| |||||||||||| || | || ||| || || || | Sbjct 5641 ACTTATCCTTCAGACCTTCTAGCACCGGGCAGGTGTTAGACTCTAAACATCATGTTACCA 5582 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304 || ||||||| || ||||||| ||||||| |||| | || |||| | | || | Sbjct 5581 CTTAGCAGAGTCCTATGTTTTTTATAAACAATCGCTACCCACTAGTATGTGCCACTTTCC 5522 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 | | | | || || |||| |||||||| |||||||||| | Sbjct 5521 TAA---TCCAAAGATAGGAGAGCACC------------CCTTCTCCGGAAGTTACGGGGT 5477 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 5476 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 5423 >seq21680 Length=18110 Score = 161 bits (178), Expect = 3e-37 Identities = 306/458 (67%), Gaps = 62/458 (14%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 13577 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 13518 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||| | Sbjct 13517 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGTTACCTTAGCA 13458 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT-----------TCG 175 | |||| ||||| | ||||||||| | | | ||| || | |||| ||| Sbjct 13457 CAGTTAGAGTTACTGTCGCCGTTTAACAGCGATTCCATTCAAAGCTTATAACACTTCTCG 13398 Query 176 CGTTA--------GCTAACC-------CCA-TCAA---TTA-----------------AC 199 |||| | | ||| ||| |||| ||| || Sbjct 13397 AGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGAC 13338 Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||||| |||||||||||| |||| || |||||| || || | || ||||||| ||| Sbjct 13337 CTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTG 13278 Query 260 TGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCA 319 |||||||||||||||||||| | |||||||| | | | | | | | | || Sbjct 13277 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---AGAT 13221 Query 320 AGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTC 379 || |||| ||||||||||||||||||| | | ||||||| ||||| Sbjct 13220 AGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 13173 Query 380 CTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 | || ||||||||||||||| | |||| ||||| Sbjct 13172 CATCGATATGGTTCTCTCAAGCGCCCTAGTATACTCTA 13135 >seq9783 Length=5772 Score = 158 bits (174), Expect = 3e-36 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| ||| || Sbjct 867 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCATT 808 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 TCGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 748 Query 133 TTGTTACGGCCGCCGTT 149 | ||||||||||||||| Sbjct 747 TAGTTACGGCCGCCGTT 731 >seq29675 Length=9094 Score = 141 bits (156), Expect = 2e-31 Identities = 133/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 7894 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCACGTCGGAGACAGCGGGGCA 7835 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| ||| ||||| ||| | ||||||||||||| |||||||||||| Sbjct 7834 TTCGTTACACCATTCATGCGGGTCGCTACTCATGCGACAAGGAATTTTGCTACCTTAGGA 7775 Query 127 CCGTT-ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173 | ||| | ||||| ||||||||| | ||||||||| || ||||||| Sbjct 7774 CAGTTAACAGTTACTGCCGCCGTTAAGCGGGGCTTCCATTCAGAGCTT 7727 >seq15227 Length=25994 Score = 89.7 bits (98), Expect = 1e-15 Identities = 141/204 (69%), Gaps = 15/204 (7%) Strand=Plus/Minus Query 215 AGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACA 274 ||| |||| || |||||| || || | || ||||||| |||||||||||||||||| Sbjct 25954 AGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACA 25895 Query 275 GTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCA 334 ||||| | |||||||| | | | | | | | | || || ||||| Sbjct 25894 GTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---AGATAGGAGAGCACCC--- 25841 Query 335 CCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCT 394 |||||||||||||||||| | | ||||||| ||||||||| | ||||| Sbjct 25840 ---------CTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCT 25790 Query 395 CTCAAGCGCCTTGGTATTCTCTAC 418 |||||||||| | |||| |||||| Sbjct 25789 CTCAAGCGCCCTAGTATACTCTAC 25766 >seq24047 Length=35018 Score = 87.8 bits (96), Expect = 5e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 69 CGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 128 ||||||||| |||| || ||||| | ||||| || |||||||||||||||||||||| | Sbjct 33803 CGTTACGCCTTTCGGGCGGGTCGACATTTACCTGATAAGGAATTTCGCTACCTTAGGATC 33744 Query 129 GTTATTGTTACGG 141 ||||| ||||||| Sbjct 33743 GTTATAGTTACGG 33731 >seq6594 Length=55411 Score = 87.8 bits (96), Expect = 5e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 48870 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 48811 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||| ||||||||||| |||||||| || ||||| Sbjct 48810 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 48765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260189810624