Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq5077 246 6e-63 seq29849 217 3e-54 seq24944 187 5e-45 seq21680 185 2e-44 seq9783 179 8e-43 seq6594 123 5e-26 seq29675 120 6e-25 seq15227 114 3e-23 seq26651 107 4e-21 seq24047 104 5e-20 seq25605 87.8 4e-15 seq7668 82.4 2e-13 seq4308 80.6 6e-13 seq15973 75.2 2e-11 >seq5077 Length=55412 Score = 246 bits (272), Expect = 6e-63 Identities = 265/345 (77%), Gaps = 13/345 (4%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | || | ||||||||||| || | |||||||||| | |||||||| Sbjct 52404 ATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAAGACAGTGCCTAGATCGTTAC 52463 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 52464 ACCTTTTGTGCGGGTCGGAACTTACCCGACAAGGAATTTCACTACCTTAGGACCGTTATA 52523 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||||||||||||| || ||||||| | || | | || | || || | || Sbjct 52524 GTTACGGCCGCCGTTCACCGGGGCTT-GGGTCGCCG----GA--GGTC--ACCAACTTCC 52574 Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 || ||||||| |||| || |||||||| || || |||||| ||||| | |||| | || Sbjct 52575 TTGACCTTCCTGCACTGGACAGGCGTCCGCCCCCATACATGGTCTTACCACTTTACGGAG 52634 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTC---TGCGGCCTGTCATAGACA 305 |||||||| ||||||||||| |||| | |||| || | | ||| | || | Sbjct 52635 ACCTGTGTGTTTGGTAAACAATCGCCCGAGCCTGGTCACACAACCCCCCTTTGTGAG-GA 52693 Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 ||||||||||||||| ||||||| ||| ||||| | |||||||| Sbjct 52694 GGCACCCCTTCTCCCGAAGTTACCGGGCTATTTTTCTGAGTTCCT 52738 >seq29849 Length=8764 Score = 217 bits (240), Expect = 3e-54 Identities = 276/377 (73%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGA-GACAGTGCCCA 59 ||| | |||||||||| | || | ||||||||||| ||| || || || ||||| | Sbjct 5953 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCAT-GTCGAAGACAGCGGGGC 5895 Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 | ||||||| || || ||| |||| ||||| |||||||||||||||||| |||||| Sbjct 5894 AGTCGTTACACCATTTGTGTAGGTCTCTACTTATGCGACAAGGAATTTCGCTAACTTAGG 5835 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAA 179 | ||| |||||| |||||||||||| ||||||| |||| || | ||| Sbjct 5834 CCAGTTGGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAACCCT--------TATAA 5783 Query 180 CAGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 || || |||| |||||||||||||||||||| | || ||||||||||| || | Sbjct 5782 CACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGCCAAACTCTATACATCGTGTTACC 5723 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGT 297 |||||||||| || |||||||| || ||||||||| || | | ||| || | Sbjct 5722 ACTTAGCAGAGTCCCGTGTTTTTAATATACAGTCGCTACCCCCAGGTATGTGCCGCTTTC 5663 Query 298 C------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 | | ||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 5662 CTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTT 5603 Query 348 CCTTAACAATAGTTCTC 364 |||| || |||||| Sbjct 5602 CCTTCGACATGGTTCTC 5586 >seq24944 Length=24956 Score = 187 bits (206), Expect = 5e-45 Identities = 269/377 (71%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCA 59 ||| | |||||||||| | || | |||||||||| ||| || || | ||| | | Sbjct 5813 TACTCCGCATCTTCACGGAGAATTCAATTTCACCATGTCCAT-GTCGTAGAGAACGGGGT 5755 Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 | |||||| || || ||| |||| ||||| ||||||||||||||||||||||||| Sbjct 5754 AGTCGTTATACCATTTATGCAGGTCACTACTTATGCGACAAGGAATTTCGCTACCTTAGG 5695 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAA 179 || |||| |||||| ||| ||||| ||||||| | |||| ||| | ||| Sbjct 5694 ACAGTTAGAGTTACTATCGCTGTTTATCGGGGCTTCAATTCAAAGCT--------TATAA 5643 Query 180 CAGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 || | |||| |||||| ||||||||||||| || || ||| ||||| | || | Sbjct 5642 CACTTATCCTTCAGACCTTCTAGCACCGGGCAGGTGTTAGACTCTAAACATCATGTTACC 5583 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-- 295 |||||||||| ||| ||||||| |||||| ||||| ||| | | ||| | | Sbjct 5582 ACTTAGCAGAGTCCTATGTTTTTTATAAACAATCGCTACCCACTAGTATGTGCCACTTTC 5523 Query 296 ----GTCATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 || ||| || ||||||||||||| |||||||||||||||||||||||||| Sbjct 5522 CTAATCCAAAGATAGGAGAGCACCCCTTCTCCGGAAGTTACGGGGTCATTTTGCCGAGTT 5463 Query 348 CCTTAACAATAGTTCTC 364 |||| || |||||| Sbjct 5462 CCTTCGACATGGTTCTC 5446 >seq21680 Length=18110 Score = 185 bits (204), Expect = 2e-44 Identities = 283/406 (70%), Gaps = 57/406 (14%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 13577 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 13518 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| ||||||||||||||| |||||||| | Sbjct 13517 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGTTACCTTAGCA 13458 Query 121 CCGTTATAGTTACGGCCGCCGTTT-ACTGGG------------GCTTA----AGTTC--- 160 | |||| |||||| | |||||||| || | | ||||| | ||| Sbjct 13457 CAGTTAGAGTTACTGTCGCCGTTTAACAGCGATTCCATTCAAAGCTTATAACACTTCTCG 13398 Query 161 ----ACT----------------GCTTCGATT----GC-TCTAACAGATCCCCTT--AAC 193 ||| ||||| ||| || | ||||| || |||| || Sbjct 13397 AGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGAC 13338 Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 |||||||||||||||||| ||||| ||||||||||| || | |||||||||| |||| Sbjct 13337 CTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTG 13278 Query 254 TGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACAG- 306 ||||||| |||||||||||| ||| | | ||| || | | | ||| || Sbjct 13277 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGG 13218 Query 307 ---GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 13217 AGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCC 13172 >seq9783 Length=5772 Score = 179 bits (198), Expect = 8e-43 Identities = 122/137 (89%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| ||| || Sbjct 867 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCATT 808 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 TCGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 748 Query 127 TAGTTACGGCCGCCGTT 143 ||||||||||||||||| Sbjct 747 TAGTTACGGCCGCCGTT 731 >seq6594 Length=55411 Score = 123 bits (136), Expect = 5e-26 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 48872 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 48813 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 | ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 48812 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 48765 >seq29675 Length=9094 Score = 120 bits (132), Expect = 6e-25 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| | ||||||| | | Sbjct 7894 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCACGTCGGAGACAGCGGGGCA 7835 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||| ||||||||| ||| | ||||||||||||| |||||||||||| Sbjct 7834 TTCGTTACACCATTCATGCGGGTCGCTACTCATGCGACAAGGAATTTTGCTACCTTAGGA 7775 Query 121 CCGTT-ATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 | ||| | |||||| ||||||||| | ||||||| |||| |||| Sbjct 7774 CAGTTAACAGTTACTGCCGCCGTTAAGCGGGGCTTCCATTCAGAGCTT 7727 >seq15227 Length=25994 Score = 114 bits (126), Expect = 3e-23 Identities = 125/166 (75%), Gaps = 10/166 (6%) Strand=Plus/Minus Query 209 AGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACA 268 ||| ||||| ||||||||||| || | |||||||||| ||||||||||| |||||| Sbjct 25954 AGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACA 25895 Query 269 GTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACAGG----CACCCCTTCTC 318 |||||| ||| | | ||| || | | | ||| ||| ||||||||||| Sbjct 25894 GTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTC 25835 Query 319 CCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || |||||||||||||||||||||||||||||| || |||||| Sbjct 25834 CCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 25789 >seq26651 Length=39741 Score = 107 bits (118), Expect = 4e-21 Identities = 128/174 (74%), Gaps = 10/174 (6%) Strand=Plus/Plus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTC 160 ||||||||| ||||| ||||| |||| |||||| | ||||||||| ||||||| || Sbjct 4949 GGAATTTCGTTACCTAAGGACAGTTAGAGTTACCGTCGCCGTTTATCGGGGCTTCCATTA 5008 Query 161 ACTGCTTCGATTGCTCTAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAGC 218 | ||| ||||| || |||| |||||||| ||||||||||| ||| Sbjct 5009 AAAACTTA--------TAACACTTCTCCTTCCGACCTTCCAACACCGGGCAGGTTTCAAA 5060 Query 219 TCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||||||||| || | |||||||| || | ||||||||| |||||| ||| Sbjct 5061 CTCTATACATCGTGTTACCACTTAGCAAAATCTTGTGTTTTTAATAAACAATCG 5114 >seq24047 Length=35018 Score = 104 bits (114), Expect = 5e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 63 CGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 122 |||||||||||||| |||||||| | ||||| || |||||||||||||||||||||| | Sbjct 33803 CGTTACGCCTTTCGGGCGGGTCGACATTTACCTGATAAGGAATTTCGCTACCTTAGGATC 33744 Query 123 GTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||| | ||| ||| ||||| Sbjct 33743 GTTATAGTTACGGTGACTGTTCACTACGGCTT 33712 >seq25605 Length=14469 Score = 87.8 bits (96), Expect = 4e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||||||| | |||| |||||| ||||||||||||||||| | || ||| Sbjct 1974 ATTTCACCGAGTCTTTCTCCGAGATAGTGCCTAAATCGTTACGCCTTTCTTATGGATCGA 2033 Query 87 AACTTACCCGACAAGGAATTTCGCTACC 114 ||||| |||||||||||| ||| |||| Sbjct 2034 TACTTATCCGACAAGGAATCTCGTTACC 2061 >seq7668 Length=17003 Score = 82.4 bits (90), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 218 CTCCTATACATCGTCTTGCGAC-TTA-GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTT 275 |||| |||||| ||||| |||| ||| | |||| |||||||||||||||||||||| Sbjct 3693 CTCC-ATACATGGTCTTACGACGTTATGGAGAATTGCGTGTTTTTGGTAAACAGTCGCTC 3635 Query 276 GGGCCTATTCTCTGCGGCCTGTCATA--GAC-AGGCACCCCTTCTCCCTAAGTTACGGGG 332 | || | || ||| | || | | || ||||||||||||||| || || ||||| Sbjct 3634 GCGCATGATCACTGTGACCCTCCTTTTTGAGGAGGCACCCCTTCTCCTAAAATTGCGGGG 3575 Query 333 TCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 | ||| |||||| |||||| | | |||| || Sbjct 3574 TTATTATGCCGAATTCCTTGAGGAGAGTTGTC 3543 >seq4308 Length=17268 Score = 80.6 bits (88), Expect = 6e-13 Identities = 80/102 (78%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 254 TGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGG---CCTGTCATAGACAGGCAC 310 ||||||||||||||||| ||| |||| | || ||| | ||| | || |||||| Sbjct 5744 TGTTTTTGGTAAACAGTTGCTCGGGCATGGTCACTGTGTTATCCTTTTTGAGG-AGGCAC 5686 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||| ||||||||||| ||| |||||| ||||||| Sbjct 5685 CCCTTCTCCCCAAGTTACGGGGCTATTGTGCCGAATTCCTTA 5644 >seq15973 Length=39042 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 28 TTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGA 87 ||| || ||| || | |||| ||||||||| ||| || | ||||||| |||| ||| Sbjct 19442 TTTTACTGAGCCTCTCTCTGAGGCAGTGCCCAGATCATTTTGTATTTCGTGTGGGTTGGA 19501 Query 88 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 | ||| || ||||||||||||||| | || || ||||||| ||| Sbjct 19502 ATTTATCCAGTAAGGAATTTCGCTACTTGAGAACTGTTATAGCTAC 19547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061885830272