Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq21680 98.7 1e-18 seq9783 95.1 1e-17 seq5077 93.3 5e-17 seq29675 89.7 6e-16 seq29849 73.4 4e-11 >seq21680 Length=18110 Score = 98.7 bits (108), Expect = 1e-18 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 13602 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 13543 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 13542 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 13483 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||| |||||||| || |||| Sbjct 13482 GACAAGGAATTTCGTTACCTTAGCACAGTTA 13452 >seq9783 Length=5772 Score = 95.1 bits (104), Expect = 1e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 748 >seq5077 Length=55412 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 52461 TACACCTTTTGTGCGGGTCGGAACTTACCCGACAAGGAATTTCACTACCTTAGGACCGTT 52520 Query 173 A 173 | Sbjct 52521 A 52521 >seq29675 Length=9094 Score = 89.7 bits (98), Expect = 6e-16 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| | || | |||| || |||||||||| || | | ||||||||| | Sbjct 7919 CGGGGTCTTTCCTTCTAGCCTTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 7860 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| ||||||| |||||||||| ||| ||||| ||| | | Sbjct 7859 GGTCCACGTCGGAGACAGCGGGGCATTCGTTACACCATTCATGCGGGTCGCTACTCATGC 7800 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||| ||||||||||||| |||| Sbjct 7799 GACAAGGAATTTTGCTACCTTAGGACAGTTA 7769 >seq29849 Length=8764 Score = 73.4 bits (80), Expect = 4e-11 Identities = 90/127 (71%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | || | |||||| Sbjct 5955 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGAAGACAGCGGGG 5896 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| Sbjct 5895 CAGTCGTTACACCATTTGTGTAGGTCTCTACTTATGCGACAAGGAATTTCGCTAACTTAG 5836 Query 166 GACCGTT 172 | | ||| Sbjct 5835 GCCAGTT 5829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546943447503