Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq5077 181 4e-43 seq21680 141 3e-31 seq29849 132 2e-28 seq15227 122 3e-25 seq6261 113 2e-22 seq10805 89.7 2e-15 >seq5077 Length=55412 Score = 181 bits (200), Expect = 4e-43 Identities = 327/470 (70%), Gaps = 30/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| | ||||||||| |||||||||||| ||| ||||||| |||| |||||| Sbjct 53571 GCTGCGCCTCCACGCATTTCGGTGAGAACCAGCTAGCACTGAGTTTGAGTGGCATTTCAC 53630 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| | |||| || | | |||||| | || |||| || ||||| | || Sbjct 53631 CCCTAACCACAACTGATCCGCTGATTCTTCAACATCAGCCGGTTTGGACCTCCCCTTAGT 53690 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTG 314 | |||| || ||| || | | ||||||||||||| | | |||||| | | | ||| Sbjct 53691 TTCACCCAAGCCTCATCCGGTC-ATGGATAGATCACCCAGGTACGGGTCCATAAGCAGTG 53749 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCT- 373 || || ||||| ||||| ||||| |||||||| | ||||| ||| Sbjct 53750 ACAATC------CCTATGAAGACTCACTTTCACTACGGCT----CTGGTGGGTTTCCCTT 53799 Query 374 ---CGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 | | ||| | | | |||| ||||||||||||| || | |||| | | Sbjct 53800 AACCAAGCCACTGCCTATGAGTCGCCAGCTCATTCTTCAACTGGAATTTGGTCA---GAT 53856 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | || | |||| || | ||| || | ||||||| || ||||||||| Sbjct 53857 CCCCGA---GCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 53908 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 || || | |||| |||||||||||||||||||||||||| | || ||||||||||| | Sbjct 53909 -CCTCGACGAGGGTTCTTTTCACCTTTCCCTCACGGTACTTCTTCGTTATCGGTCACCCA 53967 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| || ||||| | |||||||||| ||| || Sbjct 53968 GGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 54017 >seq21680 Length=18110 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 11949 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 11890 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 11889 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 11830 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 11829 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 11770 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 11769 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 11730 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 11546 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 11487 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 11486 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 11427 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 11426 GAGGGTGGTCCC 11415 >seq29849 Length=8764 Score = 132 bits (146), Expect = 2e-28 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 4397 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 4338 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 4337 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 4278 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 4277 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 4218 Query 266 GCTTCAACCTGCCCATGGATAGATC 290 ||||||||||| |||| |||||| Sbjct 4217 TCTTCAACCTGCTCATGACTAGATC 4193 Score = 105 bits (116), Expect = 2e-20 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || ||| |||||| ||| || | |||||| || ||| ||||||| |||| | Sbjct 3926 CTTCGATTGATTGTTCGCATCTGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 3867 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||| Sbjct 3866 TTTTCACCTTTCCCTCACGGTGCTTGTACGCTATCGGTCATTGAGGAATATTTAGGCTTA 3807 Query 566 ACGGGTGGTCCC 577 ||| |||||| Sbjct 3806 GAGGGCGGTCCC 3795 >seq15227 Length=25994 Score = 122 bits (134), Expect = 3e-25 Identities = 131/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| || |||| |||||| ||| |||||||||| | | ||| |||||||||| Sbjct 24537 ACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTC 24478 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| ||||| ||||||||| | ||| | || || ||||||||||||||||| | Sbjct 24477 ACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGC 24418 Query 255 GTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | ||| | | ||||||||||| ||||| |||||| | | |||||||| Sbjct 24417 CTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 24366 Score = 100 bits (110), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 24208 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 24149 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| | |||| ||||| |||| || ||||||||| Sbjct 24148 TTTTCACCTTTCCCTCACGGTACTTGTACACTATTGGTCATTGAGGAATACTTAGGCTTA 24089 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 24088 GAGGGTGGTCCC 24077 >seq6261 Length=35869 Score = 113 bits (124), Expect = 2e-22 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||||||||| || ||||||||||||||| ||| | | ||||||||| ||||| ||||||| Sbjct 28079 ATGGTTTCATGTTCTATTTCACTCCCCGACAGTGTT-CTTTTCACCCTTCCCCCACGGTA 28021 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || | |||||||||||||| || ||||||||| ||| || ||||| |||||| Sbjct 28020 CTACTTCGCTATCGGTCACCTAGAAGTATTTAGCCTTGCAAGGGGGTCCTTGTTGATTCA 27961 Query 588 CACGAAATTTCA 599 |||| ||| || Sbjct 27960 CACGGGATTCCA 27949 >seq10805 Length=30594 Score = 89.7 bits (98), Expect = 2e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 12312 CTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATC 12371 Query 541 GGTCACCAAGGAGTATTTAGGC 562 ||||| |||| ||||||||| Sbjct 12372 GGTCATTGAGGAATATTTAGGC 12393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816720336128